PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477155.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 241aa    MW: 27878.5 Da    PI: 5.6188
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
   XP_016477155.1 14 RGPWTIEEDHKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                     89********************************************97 PP

2Myb_DNA-binding52.51.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++ E++ +++++ qlG++ W++Ia++++ gRt++++k++w++
   XP_016477155.1  67 RGALSEAEEDMIIKLHSQLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      78889*****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.004961IPR017930Myb domain
SuperFamilySSF466895.31E-2811108IPR009057Homeodomain-like
SMARTSM007172.7E-51363IPR001005SANT/Myb domain
PfamPF002491.5E-111461IPR001005SANT/Myb domain
CDDcd001671.11E-41661No hitNo description
PROSITE profilePS5129427.05362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2565117IPR009057Homeodomain-like
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002498.4E-1567110IPR001005SANT/Myb domain
CDDcd001674.36E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRQPCCEKI GLKRGPWTIE EDHKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDMIIK LHSQLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPLTHKPIE QPDHHKNDDI KQNDSSEKEE INGKLELPET LPSLDFPEEQ QNIQNSTSSS  180
SLDEMNESNL EMGSNELFQN SDTLETFSSD MYNPGLEDPF QNWIGSPIHW NLFGNLDENF  240
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754444e-51HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477155.11e-178PREDICTED: myb-related protein 315-like
SwissprotQ9C7U76e-75MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1S4AKC61e-177A0A1S4AKC6_TOBAC; myb-related protein 315-like
STRINGXP_009779623.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-79myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]