PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476955.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 216aa    MW: 23791.3 Da    PI: 4.9402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-163584255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r  r +lg+f t  +Aa a++a + kl+g
  XP_016476955.1 35 TYKGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFETSHDAAMAYDAVAHKLYG 84
                    69****999.**********8...2.35************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.65E-293493No hitNo description
PROSITE profilePS5103221.8383592IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-213593IPR016177DNA-binding domain
PfamPF008476.1E-113584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-303593IPR001471AP2/ERF domain
SMARTSM003801.2E-313598IPR001471AP2/ERF domain
PRINTSPR003672.7E-93647IPR001471AP2/ERF domain
PRINTSPR003672.7E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSHCSAEKKT MKISQATSRK GCMRGKGGPE NASCTYKGVR QRTWGKWVAE IREPNRGPRL  60
WLGTFETSHD AAMAYDAVAH KLYGDNAKLN FPHMNTKNQG QNSTGSSSST YSTGVPETVK  120
MENESLFFNN DFESSCYSGG QASFPLLDNK KVEEDNSDEG VGFGGMWEDL NVNLPEIDDS  180
SIWAEAKATT LFQAVNEPGM FPGNLGDGIE YPPWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-193692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476955.11e-163PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476956.11e-163PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476957.11e-163PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476958.11e-163PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476959.11e-163PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016476960.11e-163PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-49DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1S4AJT11e-161A0A1S4AJT1_TOBAC; dehydration-responsive element-binding protein 2D-like
STRINGXP_009767453.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]