PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476823.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 266aa    MW: 29566.3 Da    PI: 4.4194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.62.2e-241312421120
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+ L++c eav+ ++l+la+al+  ++e+a ++ +p++++a+yf+eAL +++++   +l ++++    +     ++l+    ++ev P+l+f++
  XP_016476823.1 131 LVKILMACGEAVQRNNLNLADALVRLIREHAVSQFRPIKKVATYFAEALDQKIQG--MNLEDIMEFCCYT-----DNLMQ-MRLHEVRPYLEFAY 217
                     6789***************************************************..4444444444443.....33333.3489********** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdis 120
                        N+aIl+a+++++rvHiiDf+++
  XP_016476823.1 218 SSVNRAILDAFANSSRVHIIDFSLN 242
                     **********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.42105266IPR005202Transcription factor GRAS
PfamPF035147.7E-22131242IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSMDTIMENS DSFVSTTDAI IHGASNISGW TQSLISDPNI PNSSTSVDDH LQQISTAGNG  60
DDMIVSCATS RIFNSIDVSA FSRNINAVCD NYSDKLAEEG SESSNEMRSR DGLELCLGLS  120
IGSGAVNEEL LVKILMACGE AVQRNNLNLA DALVRLIREH AVSQFRPIKK VATYFAEALD  180
QKIQGMNLED IMEFCCYTDN LMQMRLHEVR PYLEFAYSSV NRAILDAFAN SSRVHIIDFS  240
LNMLSLAEMF VPHRWEKKNW GDFSPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476823.10.0PREDICTED: DELLA protein GAI-like, partial
TrEMBLA0A1S4AK760.0A0A1S4AK76_TOBAC; DELLA protein GAI-like
STRINGXP_009795437.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2381522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-28GRAS family protein