PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016476823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 266aa MW: 29566.3 Da PI: 4.4194 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 77.6 | 2.2e-24 | 131 | 242 | 1 | 120 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+ L++c eav+ ++l+la+al+ ++e+a ++ +p++++a+yf+eAL +++++ +l ++++ + ++l+ ++ev P+l+f++ XP_016476823.1 131 LVKILMACGEAVQRNNLNLADALVRLIREHAVSQFRPIKKVATYFAEALDQKIQG--MNLEDIMEFCCYT-----DNLMQ-MRLHEVRPYLEFAY 217 6789***************************************************..4444444444443.....33333.3489********** PP GRAS 96 ltaNqaIleavegeervHiiDfdis 120 N+aIl+a+++++rvHiiDf+++ XP_016476823.1 218 SSVNRAILDAFANSSRVHIIDFSLN 242 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.42 | 105 | 266 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-22 | 131 | 242 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MSMDTIMENS DSFVSTTDAI IHGASNISGW TQSLISDPNI PNSSTSVDDH LQQISTAGNG 60 DDMIVSCATS RIFNSIDVSA FSRNINAVCD NYSDKLAEEG SESSNEMRSR DGLELCLGLS 120 IGSGAVNEEL LVKILMACGE AVQRNNLNLA DALVRLIREH AVSQFRPIKK VATYFAEALD 180 QKIQGMNLED IMEFCCYTDN LMQMRLHEVR PYLEFAYSSV NRAILDAFAN SSRVHIIDFS 240 LNMLSLAEMF VPHRWEKKNW GDFSPI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016476823.1 | 0.0 | PREDICTED: DELLA protein GAI-like, partial | ||||
TrEMBL | A0A1S4AK76 | 0.0 | A0A1S4AK76_TOBAC; DELLA protein GAI-like | ||||
STRING | XP_009795437.1 | 1e-176 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA23815 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 3e-28 | GRAS family protein |