PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016476601.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 224aa MW: 24661.1 Da PI: 7.7439

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016476601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.8	2.7e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg++++++++++q+ XP_016476601.1 2 SCNGCRVLRKGCSENCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 6*******************9999777889************************************************************* PP DUF260 91 kaelall 97 ++e++l+ XP_016476601.1 97 AVETVLR 103 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.213	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.8E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRRI PDFLSASLDI 120 DEASECTDVF KVEHPSQNNM QPKMHKRRRF PEEASKVLQL ADLDLSLTPG FKSQKVFSHP 180 LPENRRPGTP SMNSEESGTT TCFESGTVIG NHQGNEPKLL SLFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	147	PKMHKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016476601.1	1e-167	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-84	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1S4AIX8	1e-166	A0A1S4AIX8_TOBAC; LOB domain-containing protein 37-like
STRING	XP_009801229.1	1e-165	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	7e-87	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]