PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016476518.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 165aa MW: 18851.6 Da PI: 7.9774

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016476518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.5	1.1e-20	14	65	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg++ taeeAa+a+++a+ +l+g+ XP_016476518.1 14 KYRGIRRRP-WGKYAAEIRDPTRNG--ARLWLGTYETAEEAARAYDRAAFSLRGH 65 8******.******98887..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.38E-28	14	74	No hit	No description
PROSITE profile	PS51032	24.974	14	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-23	14	73	IPR016177	DNA-binding domain
Pfam	PF00847	1.6E-14	14	65	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.8E-32	14	73	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-34	14	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	15	26	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	38	54	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MDSNEDQRGR RENKYRGIRR RPWGKYAAEI RDPTRNGARL WLGTYETAEE AARAYDRAAF 60 SLRGHQAILN FPNDGHYHHN NNTNIPLGPR PSYASSMGNP HMLASSSLPS SSSATGSSDQ 120 QENVRLEGHD HEEKVIEFEY LDNNLLDELL GSQVHRQANK RPKYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-29	1	74	1	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802785.1	1e-120	PREDICTED: ethylene-responsive transcription factor ERF098-like
Refseq	XP_016476518.1	1e-120	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	9e-39	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1S4AJC2	1e-119	A0A1S4AJC2_TOBAC; ethylene-responsive transcription factor ERF098-like
TrEMBL	A0A1U7YVJ3	1e-119	A0A1U7YVJ3_NICSY; ethylene-responsive transcription factor ERF098-like
STRING	XP_009802785.1	1e-120	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	3e-23	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]