PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476472.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 717aa    MW: 80381.8 Da    PI: 9.9877
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-08104142547
             AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                     GVr  k +gr+ A I dp    +r k+++l +f+ta+eA ka+ 
  XP_016476472.1 104 GVRKQK-NGRYGAVITDP----IRhKKVWLATFDTAQEASKAYL 142
                     9**888.8*********7....357*****************96 PP
2AP232.52.1e-10349396354
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     + GVr+ k +gr+ A I dp    +r k++++g+f+t eeA +a+   + ++e
  XP_016476472.1 349 IIGVRRQK-NGRYGAVITDP----IRhKKVWIGTFDTVEEASQAYFSKKCEFE 396
                     67***888.8*********7....357******************88887776 PP
3AP238.33.3e-12482529152
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     s++ GVr +  +g +++eIr p    ++ kr++lg++gtaeeA +a+   +++
  XP_016476472.1 482 SHFIGVRKRN-SGNYASEIRNP----ISkKRIWLGTYGTAEEASQAYQSKKLE 529
                     6899***888.7*********7....246*****************9766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.693101161IPR001471AP2/ERF domain
SMARTSM003801.1E-4101163IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-8103148IPR016177DNA-binding domain
CDDcd000182.12E-11104141No hitNo description
Gene3DG3DSA:3.30.730.104.4E-10104144IPR001471AP2/ERF domain
PROSITE profilePS5103212.405348407IPR001471AP2/ERF domain
SMARTSM003806.8E-4348412IPR001471AP2/ERF domain
PfamPF008476.0E-6349397IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-10350394IPR016177DNA-binding domain
CDDcd000188.13E-12351388No hitNo description
Gene3DG3DSA:3.30.730.102.5E-10351389IPR001471AP2/ERF domain
PfamPF008474.0E-6482526IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-12482531IPR016177DNA-binding domain
CDDcd000185.28E-15482523No hitNo description
PROSITE profilePS5103215.172483543IPR001471AP2/ERF domain
SMARTSM003805.2E-9483537IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16483530IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MHEKRPLLGV EWQNMGRYRS ARLRKKCKHS WGTLEFVKEA FKGFNSNTHE YEELGMIKQG  60
KESLIHVESS KETSCLMANV HSTKSSDHCD MVASDRKARR SLLGVRKQKN GRYGAVITDP  120
IRHKKVWLAT FDTAQEASKA YLVKQCEFAR LAEVNGKRHL SKVQRLKSGR CRTLLRDPIK  180
KKDVFLGNFD TAEDASKVDF SKKGKVEKLV MIKEGSISIT CEESELESSA VATPAVTGNQ  240
SLNQTDGISN ERSTSFVKRP LLGVEWQNMG RYNKKKRLDA LESVEEPAKG FCSNMQETEK  300
LVKVKQGKGP VIHEKSSRET TCSMDNVQGA KLSDGCDTPG DNPDARRSII GVRRQKNGRY  360
GAVITDPIRH KKVWIGTFDT VEEASQAYFS KKCEFEKLIQ SKQGNKPKSY EQLQPESSDE  420
CNTVTSNPKA KRSLLGVRRQ KNGRYGVEPE SFRGALSPLA NDQSLNTVGL SRSGRSNSPE  480
TSHFIGVRKR NSGNYASEIR NPISKKRIWL GTYGTAEEAS QAYQSKKLEF QKLLKVKQQC  540
NKQISRAREI QDGKRKLVNV KLGHETVNHE EFQFESAGGA SSLEIDVPIS NLSDGGSDQG  600
IDFHEISHSM GVQKRKSGKY TYEITNRISM TKMSLGSVSP TEEAFHVEQS KKFEFQSSKN  660
VELQSNPTDS SAGEKQAGQE DEDLWMGRWV QLPGDRAVKF SLQLGLPIID NYGSLLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-44HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476472.10.0PREDICTED: uncharacterized protein LOC107798048 isoform X2
TrEMBLA0A1S4AIF10.0A0A1S4AIF1_TOBAC; uncharacterized protein LOC107798048 isoform X2
STRINGXP_009599730.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-13ERF family protein