PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476415.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 252aa    MW: 28133.9 Da    PI: 5.0682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-172069255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a + a  +l+g
  XP_016476415.1 20 KYKGVRLRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDTAQFCLRG 69
                    8******99.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-282079No hitNo description
SMARTSM003801.1E-312083IPR001471AP2/ERF domain
PROSITE profilePS5103221.5882077IPR001471AP2/ERF domain
PfamPF008474.9E-112069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-292078IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-202078IPR016177DNA-binding domain
PRINTSPR003671.7E-92132IPR001471AP2/ERF domain
PRINTSPR003671.7E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEGPSQSQSQ NQNQRNEPIK YKGVRLRKWG KWVSEVRLPN SRERIWLGSY DTAEKAARAF  60
DTAQFCLRGP NAKFNFPENP PDIPGGQRLS PAEIQVVAAQ FANEYVYPQT ATQETPPSHV  120
QNTHVLKMEN EETSQSSICN HDLMGQMDNT TTITTAADWS FLDMLENYPN NAAAPPPHIS  180
SLPPAAAPPS PAVGTNNFDF GYYPGLETLS SNLYSPLHFP TRTTTGNGDE HVYQDSGNGD  240
EHFSQHSYLW NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1517771172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476415.10.0PREDICTED: ethylene-responsive transcription factor ERF018-like
TrEMBLA0A1S4AI920.0A0A1S4AI92_TOBAC; ethylene-responsive transcription factor ERF018-like
STRINGXP_009615403.11e-175(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-45ERF family protein