PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016476358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 231aa MW: 25773.8 Da PI: 10.8176 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 50.8 | 3.7e-16 | 161 | 214 | 4 | 57 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +Lkk+ ++l+ e+a XP_016476358.1 161 DRRNKRMIKNRESAARSRARKQAYMNELELEVAHLLEENARLKKQQQQLRLEAA 214 789********************************************9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-14 | 158 | 222 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.507 | 160 | 212 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.2E-13 | 161 | 210 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.36E-24 | 162 | 216 | No hit | No description |
SuperFamily | SSF57959 | 1.0E-11 | 162 | 212 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-14 | 162 | 213 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 165 | 180 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MWSSTSSSRG ISSSSSSKSS SSTTSSSSRS PFSPSNHHLN PRLKTMEEVW KDINLSSLQD 60 HTTTYSRDHD HHQTANFGGM ILQDFLARPF ATDPQPPPAA SPVPATTMLN LNSVPELHFF 120 SQNSMLRPPT PISQVPFEGL ASSAANGRKR IPEMENNSAG DRRNKRMIKN RESAARSRAR 180 KQAYMNELEL EVAHLLEENA RLKKQQQQLR LEAAVQVPKK KSLYRTSTAP F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF136919 | 7e-62 | EF136919.1 Solanum lycopersicum self-pruning G-box protein (SPGB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611048.1 | 1e-169 | PREDICTED: protein FD-like | ||||
Refseq | XP_016476358.1 | 1e-169 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 2e-42 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1S4AIV6 | 1e-168 | A0A1S4AIV6_TOBAC; FD3 | ||||
TrEMBL | A0A343UQW2 | 1e-168 | A0A343UQW2_NICTO; FDbeta | ||||
STRING | XP_009611048.1 | 1e-168 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3572 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 3e-23 | bZIP family protein |