PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476348.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 241aa    MW: 27070.2 Da    PI: 5.4274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-1891141255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr+++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+  ++g
  XP_016476348.1  91 SFRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFLMRG 141
                     59*******.**********44465..**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.43E-1990150No hitNo description
PROSITE profilePS5103222.57691149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2991150IPR001471AP2/ERF domain
SMARTSM003801.7E-3891155IPR001471AP2/ERF domain
PfamPF008472.1E-1292141IPR001471AP2/ERF domain
PRINTSPR003673.4E-1292103IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2292151IPR016177DNA-binding domain
PRINTSPR003673.4E-12131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDSSSCSSHF FYPMNSDLSS DSSWEWSNLN STSLPFNVND SEEMLLFGVL TNTAQETTSE  60
TVTSYHVKEE EVSSKSKVIK EIEEKPAKEK SFRGVRRRPW GKFAAEIRDS TRNGVRVWLG  120
TFDSPEAAAL AYDQAAFLMR GTSAILNFPV ETVQESLRDM KCHVDEECSP VVALKKRHSL  180
RKKSLSSKKS NSSSNSKVVR EVKMENVNVV VFEDLGPDYL EQLLSSSSSD HSSCNEAFLP  240
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2887150164ATERF1
3gcc_A2e-2887150164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankNTU811570.0U81157.1 Nicotiana tabacum S25-XP1 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606435.21e-177PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_016476348.11e-177PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-68ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S4AIU71e-176A0A1S4AIU7_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009606435.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-48ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]