PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476136.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28116.8 Da    PI: 8.4133
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss
  XP_016476136.1  9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSTRGKLYEFSS 59
                    68***********************************************96 PP
2K-box88.81e-29841759100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       ++++e+ ++e+ kLk+++e+Lqr qRhllG++L++L++ eL++Le qL++slk+i+s++++l+l+q+ +lq kek   e+nk L++klee
  XP_016476136.1  84 GRDSNEEKFYREYLKLKAKYESLQRYQRHLLGDELGPLNIDELEHLELQLDTSLKHIKSTRTQLMLDQLTDLQTKEKLWIEANKGLERKLEE 175
                     5688999**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.898161IPR002100Transcription factor, MADS-box
CDDcd002653.39E-42278No hitNo description
SuperFamilySSF554553.53E-32285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2486173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.67289179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFST RGKLYEFSST  60
SNTLKTLERY QKCSYGTLEV KQSGRDSNEE KFYREYLKLK AKYESLQRYQ RHLLGDELGP  120
LNIDELEHLE LQLDTSLKHI KSTRTQLMLD QLTDLQTKEK LWIEANKGLE RKLEEIYAEN  180
NLQQSWGGGE QSGAYSQQHP QTQGFFQPLE CNSTLQIGYD PASSSQITAV TSGQNINGIV  240
PGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-259517323101Developmental protein SEPALLATA 3
4ox0_B2e-259517323101Developmental protein SEPALLATA 3
4ox0_C2e-259517323101Developmental protein SEPALLATA 3
4ox0_D2e-259517323101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589584.10.0PREDICTED: developmental protein SEPALLATA 1-like isoform X1
RefseqXP_016476136.10.0PREDICTED: developmental protein SEPALLATA 1-like isoform X1
SwissprotQ8LLR21e-127MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S4AHK71e-179A0A1S4AHK7_TOBAC; developmental protein SEPALLATA 1-like isoform X1
STRINGXP_009589584.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.16e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]