PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016476062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21776.5 Da PI: 4.9612 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.7 | 7.8e-38 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+Ca++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e+ XP_016476062.1 8 SCGACKFLRRRCANECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPLHCRSEAAVTMSYEALARMQDPIYGCVGHIFELEQQVASLVEEI 102 6***********************9978******************************************************************9 PP DUF260 95 allkee 100 + + ++ XP_016476062.1 103 EITAKQ 108 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.508 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-35 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAGPGGSSCG ACKFLRRRCA NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPLH 60 CRSEAAVTMS YEALARMQDP IYGCVGHIFE LEQQVASLVE EIEITAKQMA SYAGEVHMEN 120 TINTLQFSLE CNNMNVGNNH VNHSVTSLAH VNDTSANEAF ITQINAQLPE INGFDNLFST 180 TFFDFVFEGP DPICTSNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 4 | 116 | 6 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 4 | 116 | 6 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016476062.1 | 1e-147 | PREDICTED: LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 3e-52 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A1S4AH98 | 1e-145 | A0A1S4AH98_TOBAC; LOB domain-containing protein 33-like | ||||
STRING | XP_009600628.1 | 1e-145 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-54 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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