PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475882.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 285aa    MW: 32279.7 Da    PI: 8.0681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13105152355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  XP_016475882.1 105 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 152
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10105152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-17106164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-12107156No hitNo description
SuperFamilySSF474593.01E-17107169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-15108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSQNIYLERP LKNPKTNQSW NNSYENDHIL SSHLINSNNY TNQVVNVKPK EEMSTISSNS  60
SITFATEHQN MVSQESFANQ NYMFKANCQG AKSTVSTNGK LTQAQDHIIA ERKRREKLSQ  120
RFIALSALIP GLKKMDKASV LGDAIKYLKQ LQERVKTLEE QTKKKSVESV VFIKKYELYG  180
DGENSSSDEN YSSGTLPIDE PLPEIEARFS ERDVLVRIHC EKKKGLVDKT VAEIEKLHLS  240
VINTCALSFG TSALDITIIA QMDEEFAMTV QDFVKNLRSA LKIFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-14106155857Transcription factor MYC2
5gnj_B9e-14106155857Transcription factor MYC2
5gnj_E9e-14106155857Transcription factor MYC2
5gnj_F9e-14106155857Transcription factor MYC2
5gnj_G9e-14106155857Transcription factor MYC2
5gnj_I9e-14106155857Transcription factor MYC2
5gnj_M9e-14106155857Transcription factor MYC2
5gnj_N9e-14106155857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115ERKRRE
2111116RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389281e-140AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence.
GenBankHG9755131e-140HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475882.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0723e-66BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S4AGS30.0A0A1S4AGS3_TOBAC; transcription factor bHLH25-like
STRINGXP_009616821.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-68bHLH family protein