PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475770.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 246aa    MW: 27824.9 Da    PI: 4.9225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-19142192255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  XP_016475770.1 142 RYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAYRIRG 192
                     6********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-38142206IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-23142202IPR016177DNA-binding domain
CDDcd000188.46E-32142200No hitNo description
PROSITE profilePS5103224.54142200IPR001471AP2/ERF domain
PfamPF008473.8E-13142192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31142200IPR001471AP2/ERF domain
PRINTSPR003671.0E-10143154IPR001471AP2/ERF domain
PRINTSPR003671.0E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMFENSEFLN DFTLLEFIKQ HLLEDWESPV TNCQSKNIEN KLFPNFFSDT FDNFAISEND  60
TANMFIYNNA TIEHSAAAVK IEPEFTNFLE NDRENMYIYN NDINEPTQSA VKTEPEVSVS  120
SPEMSNFTAF TAAPPPPKKA ERYRGVRQRP WGKFAAEIRD PAKNGARVWL GTYETAEDAA  180
LAYDKAAYRI RGSRAVLNFP LRVNSGEPEP VRVGSKRSSI SPESSSSSSS ENISTKRTKK  240
VAQLYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-39139207270ATERF1
3gcc_A9e-39139207270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754478e-68HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755208e-68HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761318.10.0PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_016475770.10.0PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A1S4AGD91e-180A0A1S4AGD9_TOBAC; ethylene-responsive transcription factor 2-like
TrEMBLA0A1U7V4K21e-180A0A1U7V4K2_NICSY; ethylene-responsive transcription factor 2-like
STRINGXP_009761318.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.18e-38ethylene responsive element binding factor 2