PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016475612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10538.1 Da PI: 10.4628 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.8e-11 | 3 | 48 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WTt +++ +a +++ + +W+ Iar +g g+++++++ ++ XP_016475612.1 3 SWTTKQKKRFEEALALYDRDtpdRWHNIARSVG-GKSAEEVRRHYEL 48 6*****************99*************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.8E-7 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.608 | 1 | 54 | IPR017884 | SANT domain |
CDD | cd00167 | 2.47E-7 | 3 | 50 | No hit | No description |
Pfam | PF00249 | 2.4E-8 | 3 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.88E-12 | 3 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-5 | 3 | 56 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MASWTTKQKK RFEEALALYD RDTPDRWHNI ARSVGGKSAE EVRRHYELLL KDIMQIKNDQ 60 VPLPKYKPAQ TNVRGYANEQ RLLKNLKLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-25 | 4 | 89 | 11 | 93 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607881.1 | 6e-61 | PREDICTED: protein RADIALIS-like 5 | ||||
Refseq | XP_016475612.1 | 6e-61 | PREDICTED: protein RADIALIS-like 5 | ||||
Swissprot | Q1A173 | 2e-31 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1S4AG04 | 1e-59 | A0A1S4AG04_TOBAC; protein RADIALIS-like 5 | ||||
STRING | XP_009607881.1 | 2e-60 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-34 | RAD-like 6 |