PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016475573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 303aa MW: 34450 Da PI: 10.6346 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.9 | 7.5e-20 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +sn vtfskRr g++KK +EL++LCd+e+a+iifs+ k++ + XP_016475573.1 18 SKESNLLVTFSKRRSGLFKKTSELCTLCDVEIAIIIFSPGHKVFSF 63 6678999********************************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.343 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.2E-28 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-24 | 8 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-21 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MARKMSKGRQ KIEMTKMSKE SNLLVTFSKR RSGLFKKTSE LCTLCDVEIA IIIFSPGHKV 60 FSFGHPNVES IIDCFLTRNI PSSTTANSSS TTCQLVEAHR NANVRELNKQ LLEILNQLEF 120 EKKREVEIVK INKAKIGKNW WERTVNELGH AELEQLKLGM EELKGLTRLY RRIFGRLGFA 180 HHKRDTEVAN AGKSRGNLRE RDMEVANAKK AEWLRSRRPL QMRGAKALQG EIFVIYGKII 240 FTSCAKLEAA DSGMIAPAVG LRRCDGRRSD KGVADVRIVL GEEDRRRGYL GAYAMPQVQS 300 WRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-14 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
5f28_A | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
5f28_B | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
5f28_C | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
5f28_D | 1e-14 | 8 | 89 | 2 | 83 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016475573.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-51 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S4AGM0 | 0.0 | A0A1S4AGM0_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009792225.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-52 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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