PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475426.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27923.7 Da    PI: 9.6009
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsstg+lyeyss
  XP_016475426.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYEYSS 59
                    8***********************************************96 PP
2K-box13.82.4e-0681108936
           K-box   9 leeakaeslqqelakLkkeienLqreqR 36 
                     + +++   +q+e+a L+++++nLq+++R
  XP_016475426.1  81 TPTSEVRFWQREAAVLRQQLQNLQENHR 108
                     5678899*******************99 PP
3K-box66.59.2e-231271913498
           K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +R +K+e+l+++i+el +k + +++en++L kk+
  XP_016475426.1 127 DTRQMMGEELSGLSVKDLQNLENQLEMSLRGVRVRKDEILIDEIQELNRKGNLIHQENMELYKKV 191
                     57***********************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.819161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.36E-46278No hitNo description
SuperFamilySSF554557.46E-33290IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.87486197IPR002487Transcription factor, K-box
PfamPF014863.0E-21128191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYEYSST  60
SMKSVIERYN KTKEENHQLA TPTSEVRFWQ REAAVLRQQL QNLQENHRLR APRLIPRDTC  120
HLPPATDTRQ MMGEELSGLS VKDLQNLENQ LEMSLRGVRV RKDEILIDEI QELNRKGNLI  180
HQENMELYKK VYGNRDANGV SGIALAPNSL SINEDPHTPV HLQLSQPQQQ NYGTSGTTEL  240
GLQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21174174MEF2C
5f28_B8e-21174174MEF2C
5f28_C8e-21174174MEF2C
5f28_D8e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754434e-51HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755164e-51HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766320.10.0PREDICTED: MADS-box transcription factor 23-like isoform X2
RefseqXP_016475426.10.0PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP496e-98MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4AFL30.0A0A1S4AFL3_TOBAC; MADS-box transcription factor 23-like isoform X1
TrEMBLA0A1U7VWJ30.0A0A1U7VWJ3_NICSY; MADS-box transcription factor 23-like isoform X2
STRINGXP_009766319.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-96AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]