PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475302.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 277aa    MW: 31211.5 Da    PI: 9.8592
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.22.3e-2995146459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      rY+eClkNh as+Ggh++DGCgEfmpse+      alkCaAC+CHRnFHRre+ +
  XP_016475302.1  95 RRYRECLKNHVASMGGHVLDGCGEFMPSEE----EGALKCAACNCHRNFHRRETFS 146
                     58*************************944....46****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.1E-2696144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-2696143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1896157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.75197143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.39E-19203274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-29204275IPR009057Homeodomain-like
PROSITE profilePS500718.762211275IPR001356Homeobox domain
TIGRFAMsTIGR015653.3E-27213270IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGIPNSIGYN PSSSFSDTRR NEKAGSGNVI LSPIQTLNQH NQHSLQGHSQ LNSHQLEEER  60
DPLVAATNRA QLRQQSTTSG NGTTTTTTSS SSVVRRYREC LKNHVASMGG HVLDGCGEFM  120
PSEEEGALKC AACNCHRNFH RRETFSEAET QIARPRPPYS TFNPPIHSSS NYHHNYSTAS  180
PVMMTFGRNA ESSSEHLNLF NSNAGGGQSS KSKKRFRTKF TAEQKERMHE FAEKVGWSIQ  240
KQDEQELQHF CNQVGVKRQV FRIWMHNSKQ ANKKRQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202142691873ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475302.10.0PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLA0A1S4AF530.0A0A1S4AF53_TOBAC; zinc-finger homeodomain protein 2-like
STRINGXP_009592418.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-45homeobox protein 24