PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016475213.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 416aa MW: 46869.4 Da PI: 6.2294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016475213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	225	270	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h E++RR + ++f+ Lr l+P++ K++ a+i A+ YI++L XP_016475213.1 225 KHHTSEKQRRVHFSDKFQALRALIPNP-----SKNDRATIIADAIGYINML 270 68899*******************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-13	219	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.697	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-7	225	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.99E-9	225	274	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-13	225	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-6	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MYAESSLSFD PTSQQDEGIE EKGLLQNDHL TTCATNFSMQ QQQQLNLEMV NFHSTLNTNI 60 VQTENSLIQE FEHEHNNNTV LSYGQSNWEE MGFNPYHQQG HEQHQISNFP TSTLISNNPP 120 NSIANTSLGH WVGFPTTELA STSTNLFYDP QLINMPVNIC TTQPSLFKEL FRLSPHGSYG 180 LGSSGTGSLF SHGVAEEEVT GALYHDAGSF DIKSAARKRE GKDIKHHTSE KQRRVHFSDK 240 FQALRALIPN PSKNDRATII ADAIGYINML KTKVNELKNE VEKKERVKRQ RTEDGSCGFK 300 TVMAEAAENN VNIKSSWLQK KSKNTEVDVR IMDDEVTVKL VQQQKRMNCL LFVSKAFDEF 360 QLDLHHVSGG LIGDHYSYLF NSKICEGCTV YASAIANKVI EVLDKELNMH QVATFN

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MYAESSLSFD PTSQQDEGIE EKGLLQNDHL TTCATNFSMQ QQQQLNLEMV NFHSTLNTNI  60
VQTENSLIQE FEHEHNNNTV LSYGQSNWEE MGFNPYHQQG HEQHQISNFP TSTLISNNPP  120
NSIANTSLGH WVGFPTTELA STSTNLFYDP QLINMPVNIC TTQPSLFKEL FRLSPHGSYG  180
LGSSGTGSLF SHGVAEEEVT GALYHDAGSF DIKSAARKRE GKDIKHHTSE KQRRVHFSDK  240
FQALRALIPN PSKNDRATII ADAIGYINML KTKVNELKNE VEKKERVKRQ RTEDGSCGFK  300
TVMAEAAENN VNIKSSWLQK KSKNTEVDVR IMDDEVTVKL VQQQKRMNCL LFVSKAFDEF  360
QLDLHHVSGG LIGDHYSYLF NSKICEGCTV YASAIANKVI EVLDKELNMH QVATFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016475213.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1S4AFH0	0.0	A0A1S4AFH0_TOBAC; transcription factor bHLH91-like
STRING	XP_009788151.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	5e-53	bHLH family protein