PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016475140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | STAT | ||||||||
Protein Properties | Length: 692aa MW: 77880.8 Da PI: 5.1218 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 190.9 | 1.4e-59 | 206 | 325 | 1 | 120 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldv+l++ +++p++ +vevvasL+yad+ ++vek+ d+eapLL++ydG+e++s+drp+k++ GrasfklkisqLsskcdnrLf+i+feipk+ +y XP_016475140.1 206 LDVTLMDNFSRPITEEVEVVASLVYADDEAPVEKPVDDEAPLLTNYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFCIRFEIPKMGNY 300 89********************************************************************************************* PP STAT 96 pfleavskpirCisrsrntrssslt 120 pfle +s+pirCisr+rntr++sl+ XP_016475140.1 301 PFLEIFSRPIRCISRNRNTRAASLM 325 ********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 4.1E-5 | 22 | 149 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 1.98E-8 | 22 | 126 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF55550 | 3.47E-10 | 596 | 654 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 1.5E-7 | 596 | 650 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.241 | 598 | 692 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MGIQDYGFLE DLQVEFKDYD ATNGVFLCFW FYLNKASTLP STILLQNHSD VTSHAPFLLL 60 DEKKRLLLYP LLTSWREDVY ATSESEFSTK KWVHVGCEVT ENLLRLYLDG EIVGEKSLTS 120 SLNNDSVSDS SEISFPCISG KGSQLDGYVY SAELLPVVSS IKNHYVKDPP VQLSIDSSSA 180 HEIEEDTDGV WSIVGGKASC RRNFSLDVTL MDNFSRPITE EVEVVASLVY ADDEAPVEKP 240 VDDEAPLLTN YDGIEYASSD RPSKVISGRA SFKLKISQLS SKCDNRLFCI RFEIPKMGNY 300 PFLEIFSRPI RCISRNRNTR AASLMLRKSS LGIHLLNGSQ SPILEDGSSD LPCIVREAKQ 360 SPSSKRVKLG QEKLCANFKD DFVLQQANGE SKSHSWISED NYAYLNSLVA RPVSHGGAQN 420 FSSDSENSET TNSGIDDFPS NIDPISDVDV FKYCLGDLNE RRLLLKEMAM SAKEEELATF 480 AERISLFSGC SHHRHQISIS KRLIEVGIKC WNLISDDNHH VLWENLVSGL QEHFLKMTFG 540 HTRSLTHQDF DLLRRVSGCQ DLVSQDNFEK VWCWLYPIAF TLSQQCITSL WGSAPPVWIE 600 GFITKEEAES SLRGQDPGTF ILRFPTSRSW PHPDSGNLVA TYVGSDYTIH HRLVSLDFIY 660 SSGAKGMTIK PIQDMLLEQP ELRRLGRIVR SQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210354 | 1e-132 | AC210354.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0102J11, complete sequence. | |||
GenBank | HG975519 | 1e-132 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016475140.1 | 0.0 | PREDICTED: uncharacterized protein LOC107796828 | ||||
TrEMBL | A0A1S4AEM5 | 0.0 | A0A1S4AEM5_TOBAC; uncharacterized protein LOC107796828 | ||||
STRING | XP_009769180.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9394 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |