PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474908.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 325aa    MW: 35362.7 Da    PI: 6.5049
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.8e-393089261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    +++ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s
  XP_016474908.1 30 NQQVLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 89
                    68899****************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-252983IPR003851Zinc finger, Dof-type
PfamPF027013.5E-333288IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6653488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQDIHPIGAG GGRFFGGGGD RRLRPSHHQN QQVLKCPRCD SPNTKFCYYN NYNLSQPRHF  60
CKSCRRYWTK GGVLRNVPVG GGCRKSKRSK PKSSTLPSNA AAEAADAASE ERKSNSNSSS  120
ESSSLTATTP AAAAANTTGS ATAEVVSAAS SNSASTFLNF HESNFFLPNS TNQSFDHQPL  180
MDHSADGQIF QDIGNFTNFM TSSTDPSAVG FNMIEIPSYR LPENQNSNEQ WNQPSKMVGT  240
DQPVSDLKME QMDTSFMNQT GRIEFGLQQN KVNNSEIAPL DWQTGGGGGD GEHGLYDLTG  300
TVDQSYWSQT QWGENVKGCI EEAIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11018GGRFFGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631669.20.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_016474908.10.0PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLA0A1S4AEM60.0A0A1S4AEM6_TOBAC; dof zinc finger protein DOF5.4-like
STRINGXP_009631669.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.14e-32DOF zinc finger protein 1