PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016474908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 325aa MW: 35362.7 Da PI: 6.5049 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.8e-39 | 30 | 89 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s XP_016474908.1 30 NQQVLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 89 68899****************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-25 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-33 | 32 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.665 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MQDIHPIGAG GGRFFGGGGD RRLRPSHHQN QQVLKCPRCD SPNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSKRSK PKSSTLPSNA AAEAADAASE ERKSNSNSSS 120 ESSSLTATTP AAAAANTTGS ATAEVVSAAS SNSASTFLNF HESNFFLPNS TNQSFDHQPL 180 MDHSADGQIF QDIGNFTNFM TSSTDPSAVG FNMIEIPSYR LPENQNSNEQ WNQPSKMVGT 240 DQPVSDLKME QMDTSFMNQT GRIEFGLQQN KVNNSEIAPL DWQTGGGGGD GEHGLYDLTG 300 TVDQSYWSQT QWGENVKGCI EEAIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 18 | GGRFFGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631669.2 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
Refseq | XP_016474908.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A1S4AEM6 | 0.0 | A0A1S4AEM6_TOBAC; dof zinc finger protein DOF5.4-like | ||||
STRING | XP_009631669.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 4e-32 | DOF zinc finger protein 1 |