PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474898.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 325aa MW: 36682.3 Da PI: 7.4557

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102	3.4e-32	62	167	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k ltpsdv+k++rlv+pk++ae++ + + e+++ l +ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gDf++F++++ + XP_016474898.1 62 FEKPLTPSDVGKLNRLVIPKQHAEKYfpingtqNDSGEKGFLLNFEDELGKLWTFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDFILFERHRLD 156 99*************************999844445899***********************************************75448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + + +++++r+ XP_016474898.1 157 GDRTFIGWRRR 167 88899999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-40	53	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-31	57	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.16E-30	60	157	No hit	No description
Pfam	PF02362	1.6E-29	62	168	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-26	62	168	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.987	62	168	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSINHCPSQL TEPFWCKTKQ HYIMESTRKS SSPNHQNQTT PTSLCPNSNQ LEENEIPKEH 60 LFEKPLTPSD VGKLNRLVIP KQHAEKYFPI NGTQNDSGEK GFLLNFEDEL GKLWTFRYSY 120 WNSSQSYVLT KGWSRFVKEK KLDAGDFILF ERHRLDGDRT FIGWRRRNTA AGATVLEQES 180 GVAPPGGGGG GWGQVYYGGS GHPYPSAGVP YQPDCLHAGS RVMHKQTAAN GNNTRRQVRL 240 FGVNLAECEV DESSWSEPST SDGSSTPSHH QQSHEYQGQA GQPYYQYQVH CPNPPAASSY 300 AKNNHHNNMD VDYSRDVNQM RYHQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-48	58	167	4	113	B3 domain-containing transcription factor NGA1
5os9_B	7e-48	58	167	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016474898.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	5e-65	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1S4AEL4	0.0	A0A1S4AEL4_TOBAC; B3 domain-containing protein At2g36080-like
STRING	XP_009761495.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	7e-67	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]