PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474876.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 321aa MW: 35608.2 Da PI: 6.3153

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.8	8.5e-37	13	69	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a +cprC s ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ XP_016474876.1 13 APTCPRCGSINTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 69 568**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	6	59	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	14	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.481	14	68	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	16	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MERGIWKTNV EMAPTCPRCG SINTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG 60 GGCRKSRRGK SSSSSIRSSS TDHHHGLISR NLGRGINSLN NPSNNIDQST TSLAQGGDHH 120 GPSIDLALVY ANFLNDSSKP QPEVHHQNLE LPELLPNDHH QAVVVGPSFV FSDMINMEFA 180 SDLGQETRLS DGDGVYFSGI DEKQQTMQNV MNHNDDVHYT NMNMNANSSN NELGNYMQLP 240 PLPCEELGAS SEGMAWSNSH DDHHMVFTND ILINTSHSST GGLEPEPEPE ILAAQDPSHH 300 HANAYDRSLF SLSNFGNIFR P

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773208.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
Refseq	XP_016474876.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A1S4AE20	0.0	A0A1S4AE20_TOBAC; dof zinc finger protein DOF2.1-like
TrEMBL	A0A1U7W3N1	0.0	A0A1U7W3N1_NICSY; dof zinc finger protein DOF2.1-like
STRING	XP_009773208.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12963	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	7e-36	Dof family protein