PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474848.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 274aa MW: 30918.6 Da PI: 7.4507

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.3e-40	28	88	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+a+kcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk++ss XP_016474848.1 28 EQAQKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRTSS 88 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	27	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	29	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.283	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSQTLESML AYTNKPAEQE KKPRLAAEQA QKCPRCDSTN TKFCYYNNYS LTQPRYFCKS 60 CRRYWTKGGT LRNVPVGGGC RKNKRTSSKR SQDLESMTSS PNYPLSSFTP LSCYDSSDLS 120 LAFAKLQKHA SGHLEIEENN MLMMCNKVHY DDFLGAQRGG FLELTPNVFH HNMCYGIDND 180 GKLGHVENGE IMGLNISAEM GMHYDQEMSS TLATGKQEMC NIAREGENNR KLWGFPWQIN 240 GEVSNMGDFE ASNRQSWNGF DSSFHGLNHS SLIA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016474848.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A1S4AEG1	0.0	A0A1S4AEG1_TOBAC; dof zinc finger protein DOF2.1-like
STRING	XP_009617906.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	4e-47	Dof family protein