PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474508.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 998aa MW: 110901 Da PI: 6.0977

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.2e-41	142	219	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ XP_016474508.1 142 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 219 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.2E-33	137	204	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	140	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-38	141	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.8E-30	143	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.32E-7	771	884	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.8E-5	773	885	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.83E-6	774	884	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 998 aa Download sequence Send to blast
MEASVGERYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV 60 ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIVVD ENESGGTLSL KLGGQVEPVA 120 EKRTKLAAAQ PVTSTPTTTR AVCQVDDCGT DLSKAKDYHR RHKVCEMHSK ASRALVGNVM 180 QRFCQQCSRF HALQEFDEGK RSCRRRLAGH NKRRRKTQSE SVVNNNSSND GQASGYSLMS 240 LLKMLSNMHS ANGTNHTEDQ DLLAHLLRSI AGQGSLNGDK SLSGLLQESS SMLNNRSILR 300 NPELASLISN GSQVPPRAKE HQFTNSAAEI PQKRLDAHDV RLEDARTASS QSPGILFPPT 360 QSNSQAYAPG RGSTTGRSKL IDFDLNDVYV DSDDNVEDID RSPGQCPSWL QQDSHQSSPP 420 QTSGNSDSAS AQSPSSSSGD TQTRTDRIVF KLFGKDPSDF PFVVRAQILD WLSHSPTEIE 480 SYIRPGCVVL TVYLRLPESA WEELCYDLNS SLSRLLDVHG DDSFWTKGWI YISVQDQIAF 540 VCDGQVLLDM SLPSGSDEHS TILSVRPIAV PVSGRAQFLV KGYNLSKPST RLLCALESNY 600 LVPEANNEVE EHVDGIDKDD NLQSLNFTCS VPAVSGRGFI EVEDHGLSNS FFPFIVAEED 660 VCSEIRMLES ELDLTSANYV KGQINNMEAR NQAMDFIHEL GWLLHRNNLK ARLEHFGPDA 720 VLYPLKRFKW LIDFCVDHEW CAVVKKLLNV LLDGTVGAGD SSFLKFALTE MGLLHRAVRR 780 NSRPLVELLL TYTPEKVADE LSSEYQSLVG VDGEFLFRPD CVGPAGLTPL HVAAGIDGSE 840 DVLDALTDDP GKVAIEAWKN TRDSTGFTPE DYARLRGHYS YIHLVQRKIS KKATSGHIVV 900 DIPIVPSVEN SNQKEEFATT SLEISMTERR PISRPCGLCH KKLAYGSRSR SLLYRPAMFS 960 MVAMAAVCVC VALLFRGSPE VLYIFRPFRW EMVDFGTS

Sequence ? help Back to Top

Protein Sequence Length: 998 aa Download sequence Send to blast

MEASVGERYY HMGGPDLRGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV  60
ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIVVD ENESGGTLSL KLGGQVEPVA  120
EKRTKLAAAQ PVTSTPTTTR AVCQVDDCGT DLSKAKDYHR RHKVCEMHSK ASRALVGNVM  180
QRFCQQCSRF HALQEFDEGK RSCRRRLAGH NKRRRKTQSE SVVNNNSSND GQASGYSLMS  240
LLKMLSNMHS ANGTNHTEDQ DLLAHLLRSI AGQGSLNGDK SLSGLLQESS SMLNNRSILR  300
NPELASLISN GSQVPPRAKE HQFTNSAAEI PQKRLDAHDV RLEDARTASS QSPGILFPPT  360
QSNSQAYAPG RGSTTGRSKL IDFDLNDVYV DSDDNVEDID RSPGQCPSWL QQDSHQSSPP  420
QTSGNSDSAS AQSPSSSSGD TQTRTDRIVF KLFGKDPSDF PFVVRAQILD WLSHSPTEIE  480
SYIRPGCVVL TVYLRLPESA WEELCYDLNS SLSRLLDVHG DDSFWTKGWI YISVQDQIAF  540
VCDGQVLLDM SLPSGSDEHS TILSVRPIAV PVSGRAQFLV KGYNLSKPST RLLCALESNY  600
LVPEANNEVE EHVDGIDKDD NLQSLNFTCS VPAVSGRGFI EVEDHGLSNS FFPFIVAEED  660
VCSEIRMLES ELDLTSANYV KGQINNMEAR NQAMDFIHEL GWLLHRNNLK ARLEHFGPDA  720
VLYPLKRFKW LIDFCVDHEW CAVVKKLLNV LLDGTVGAGD SSFLKFALTE MGLLHRAVRR  780
NSRPLVELLL TYTPEKVADE LSSEYQSLVG VDGEFLFRPD CVGPAGLTPL HVAAGIDGSE  840
DVLDALTDDP GKVAIEAWKN TRDSTGFTPE DYARLRGHYS YIHLVQRKIS KKATSGHIVV  900
DIPIVPSVEN SNQKEEFATT SLEISMTERR PISRPCGLCH KKLAYGSRSR SLLYRPAMFS  960
MVAMAAVCVC VALLFRGSPE VLYIFRPFRW EMVDFGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-31	134	216	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00603	PBM	Transfer from AT2G47070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016474508.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S4AD93	0.0	A0A1S4AD93_TOBAC; squamosa promoter-binding-like protein 1 isoform X1
STRING	XP_009592086.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]