PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474421.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 276aa MW: 30319.5 Da PI: 8.9989

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	42	102	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++ s XP_016474421.1 42 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNRRCS 102 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	35	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	43	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.91	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDTTQWTQDI GLVTSMAAEI APPNITCSRP SSPLEKKVRP QKDQAVNCPR CNSTNTKFCY 60 YNNYSLTQPR YFCKTCRRYW TEGGTLRNVP VGGGSRKNRR CSSSSLSLSS SSQNFPDSNP 120 NPSLSHQNPN YKINLGNSQD FNLGLPSITH DHNYFHSVPQ FLEFPKMDRG NNGNNQPLSS 180 TSSTTPISTT DLLRTGIASR GLTSFISTPT PDINALYTSS FLSGVQENGA KIMFPFGYLN 240 KQLSGTSAEA ENYNQSKGQE NSSAGYWNGM LGGGSW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	2e-65	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784397.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Refseq	XP_016474421.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
TrEMBL	A0A1S4ACT3	0.0	A0A1S4ACT3_TOBAC; dof zinc finger protein DOF2.5-like
TrEMBL	A0A1U7WWV1	0.0	A0A1U7WWV1_NICSY; dof zinc finger protein DOF2.5-like
STRING	XP_009784397.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	9e-47	Dof family protein