PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474357.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 1559aa    MW: 170443 Da    PI: 6.5303
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0615361559226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      ++++C+ f+++G Ck G++C + H+
  XP_016474357.1 1536 GQRICK-FYESGRCKKGSSCDYLHP 1559
                      6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.52E-985157IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-8106164IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564110176IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-7112158IPR001965Zinc finger, PHD-type
CDDcd155681.38E-19112157No hitNo description
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475925.23E-20365442IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.6E-25366449IPR003121SWIB/MDM2 domain
PfamPF022017.3E-14368441IPR003121SWIB/MDM2 domain
SMARTSM001513.6E-4368446IPR019835SWIB domain
PROSITE profilePS5136024.497499632IPR004343Plus-3 domain
SMARTSM007191.6E-38499609IPR004343Plus-3 domain
SuperFamilySSF1590421.12E-29500628IPR004343Plus-3 domain
PfamPF031269.6E-22504607IPR004343Plus-3 domain
SuperFamilySSF552771.44E-14787849IPR003169GYF domain
CDDcd000724.42E-15797853No hitNo description
PROSITE profilePS5082914.377797850IPR003169GYF domain
SMARTSM004441.4E-10798852IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14799850IPR003169GYF domain
PfamPF022131.7E-9800841IPR003169GYF domain
PROSITE profilePS5010315.61915341559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.02E-615341558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-415381558IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1559 aa     Download sequence    Send to blast
MDGGNSSSEL YRPCVQQAHS LSFDGSTGTS MGLQGSEQCS SVQYMDDFQL VGVPAAVTGG  60
APITVAVDGR TSVANVIGDG VEKRKRGRPP RFHTTLAKPP PPKKPREEDE DVCFICFDGG  120
SLVLCDRKGC PKAYHPACIK RDEAFFRSKA KWNCGWHICS VCQKASHYLC YTCTYSLCKA  180
CTKNADYLCV RGNKGFCSTC MRTIMLIENK DQANKEMVQV DFDDKSSWEY LFKVYWVILK  240
EKLSLTLDEL LQAKNPWKES DAVHGKRQLM PYGHYVANDG KSVAGKSFDY IEQKKPIEPL  300
ELSKKDPPTA EIRAVSDSGN ASILSSTPLL ELTKPVQELK VQNEDCLRSK QESTVAETSV  360
NGCMEWASKE LLDFVAHMKD GDTSAISQFD VQALLLDYIK RNNLRDPRRK SQIICDLRLK  420
SLFGKPRVGH IEMLKLLEFH FLIKEESKKS AFIPAGIVGT MTSHVEPDDS NDISSSKKRR  480
TRKNGEVKMT QINLDEYAAI DAHNINFIYL RRDLMETLAE DVEKFHDRVI GSVVRIRIPG  540
NDQKQEIYRL VHVVGTSKSS EPYKIRDKTV DVLLEVLNLD KKEALSIDSI SNQDFCEDEC  600
RRLRQSIKCG LVKRLTVGEI QKKAMELRAV KLNDSLEAEI LRLNHLRDRA SEKGHKKELR  660
ECIEKLELLK TPEERQRRLL EIPEVHADPK MDPDYESEGD DGGSNYKRKV EYLAPRCTRI  720
SRRDEKLMSS GSLAKEEGSI MARCRMSEKR EACGYNILDK LGNRLTAEQA VDRSGSETSI  780
ASFSTVNLSS ANSIETDKLW HYRDPAGRIQ GPFSVMQLRK WNTSGLFPPE MRIWTNHEHD  840
DSILLTNALK GLFHKEPQVH GQTSSQSQEP AASDSRTSVR WSETATGSGG ECGKREAPGH  900
PHKANYHSNG NTEFTMMNGL SPSSPQCLDS LKGNSSCSDK PQLSSPVPSS SQREVILALP  960
RQERGNANDN CRPATDHGTQ NSRGSAMCQI NDGCGHNTQS NSRNLGSSLA QNPGSFTSNR  1020
YTINLDSGSR FASATKSSDS FEQKGNMSLP DLPSPTPETS YGELEAQAAE KLLLLSSVIP  1080
VCGSDNHDLP SPTPISDRET QGGHAAENRE SVPSSLPVQE SGHNWSSASS LVVGGVQLRE  1140
IDGCGRSSPA AKPSIEEWDS GIVSASSQKP AEAVGNNVAT PMSNANQLTA KPSTEEWDSG  1200
IVSSSTLKPA EAVGNHVASP TSNADQLTAK PSTTEEWDSG LVSVSSPKPA EAVGDHVATP  1260
TSNADQLNHT SPSHPVSNFF GEPIEFSTLA EESVSDLLAE VDAMESQNQN NMGSPTSAMR  1320
CGEEMIPGCR NDCFSPIEEL GRTHDPVRSD ALSSTGDLQL PCQSTVTDET VGASRADAFD  1380
PLRRSGGNSS TSSEGETKSA DVLFSQGDAG SNIPCTISQT TAFSAMGRNT GLEGMTSGRG  1440
AAPGNTIWGG PVQGYANVGF SSSMGAAWGN SHMNRGAPFT GNPVWDSQRR YAGERSGGPR  1500
EWALQGGESG FGRGRSSWNR QQPYGGGGYS RPPPKGQRIC KFYESGRCKK GSSCDYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-14104179981Histone-lysine N-methyltransferase NSD3
4gnd_C6e-14104179981Histone-lysine N-methyltransferase NSD3
4gne_A6e-14104179981Histone-lysine N-methyltransferase NSD3
4gnf_A6e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_A6e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_D6e-14104179981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2414220.0AC241422.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-212h22 map 1, complete sequence.
GenBankAC2414250.0AC241425.15 Solanum lycopersicum strain Heinz 1706 clone slm-130o13 map 1, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474357.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X3
TrEMBLA0A1S4ACH60.0A0A1S4ACH6_TOBAC; zinc finger CCCH domain-containing protein 44-like isoform X3
STRINGXP_009789365.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding