PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473899.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 400aa    MW: 44059.7 Da    PI: 7.2614
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.1e-32224279156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_016473899.1 224 KQRRCWSPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 279
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.865221281IPR017930Myb domain
SuperFamilySSF466891.09E-18222282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-29222282IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-28224279IPR006447Myb domain, plants
PfamPF002498.0E-8226277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMINNHENNY TEKMQRCQQY IDALEEERNK IQVFSRELPL CLELVTQAID TYKQQLSGTT  60
TEYNLNAQSD VECSEEHTSS DVPILEEFIP LKRTFSHENE EEDEDERESH KSKTYNISDT  120
SCSKDNKNSD KSCKKSDWLR SVQLWNNNPT PDPTPKEELK PKKVAVVEVK KNGSGGAFHP  180
FKKEKSAPAA IEPPTSAVVS AAAASSTAET GSGSKKEEKD EKRKQRRCWS PELHRRFLQA  240
LQQLGGSHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSPSSIHN NNQQPPQFVV  300
VGGIWVPPPE YAAMAAAAPS ASGEASGVAN SNGIYAPIAT LPKGPIHDVS GGTLKQRQHN  360
NKPSRSSEHG SGSHSDGGGV HSNSPATSSS THTTTASPVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-51HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473899.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ9FPE86e-98HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A1S4ABB10.0A0A1S4ABB1_TOBAC; two-component response regulator-like APRR2
STRINGXP_009619370.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52192438
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.17e-74G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]