PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016473785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 38052.1 Da PI: 8.8827 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.2 | 1.6e-21 | 138 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a++k++g XP_016473785.1 138 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEDAARAYDEAALKFRG 187 7********.**********76....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.475 | 138 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-39 | 138 | 201 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-14 | 138 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-34 | 138 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-23 | 138 | 196 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-12 | 139 | 150 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-29 | 146 | 197 | No hit | No description |
PRINTS | PR00367 | 3.2E-12 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MCILKVANFR NKAIYKPIRD DVMFSGINRE EEMSVMVSAL TRVVRGEDKV LSQGEGCDIG 60 AANSGVSPSL YSISGGVGEK RGREEQSEQL FLADIRSSGG ESSNIRTIAS NTPTTESTFT 120 YITPTYGEGN INHQPRRRYR GVRQRPWGKW AAEIRDPYKA TRVWLGTFDT AEDAARAYDE 180 AALKFRGSKA KLNFPENVKL LPTSSTHEQS QLKLFPHQNA VGNLGLPTST FPTDYVENTR 240 VSSFSNNYPI IHTQPNYYYN NTNINPQIFL NDDFQRLQPP SSLLNQFQYS SSSSSSLSSS 300 SQLPFLPRMF FQGSQPPQNS GNDFRATSSD STYDHPSSSS R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 137 | 198 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU856251 | 3e-80 | CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 3e-80 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767382.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
Refseq | XP_016473785.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A1S4AAU4 | 0.0 | A0A1S4AAU4_TOBAC; ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A1U7VH14 | 0.0 | A0A1U7VH14_NICSY; ethylene-responsive transcription factor ERF113-like | ||||
STRING | XP_009767382.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 4e-26 | ERF family protein |