PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016473712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 313aa MW: 34444.9 Da PI: 7.4629 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.4 | 6.4e-38 | 27 | 86 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +a+kcprCds ntkfCyynny+lsqPr+fC++CrryWtkGG lrnvPvGgg+rk+++s XP_016473712.1 27 QPQAIKCPRCDSLNTKFCYYNNYNLSQPRHFCQSCRRYWTKGGILRNVPVGGGCRKSRRS 86 56899****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 25 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.012 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MQDIHSIGGG GGRFYGGGGD RRLRLNQPQA IKCPRCDSLN TKFCYYNNYN LSQPRHFCQS 60 CRRYWTKGGI LRNVPVGGGC RKSRRSKPKP SAVSTTDDTS QENKSNSNSN SNSGSESSSL 120 TAITSTAAAA ANTSVAMTPE FVLGNSSNPT LPDVQDSRFL VTETTKGDFI QQVVGRHTTE 180 EQIFHDIGDY PINVNNISMY QNSNAGFFDR TAHVELSGRR ENDGGLAPVD WQTGGLFGMV 240 ENSDLQYSYW YQRQWGSKMG LNNEPIGNLP KGEELDNDQM DEVPLEPQAN RRGRMPQDIV 300 SVPPPPSPRA ASH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 18 | GGRFYGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 3e-46 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473712.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A1S4AAP7 | 0.0 | A0A1S4AAP7_TOBAC; dof zinc finger protein DOF5.4-like | ||||
STRING | XP_009786397.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16953 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-37 | OBF binding protein 4 |