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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016473618.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 332aa MW: 37208.8 Da PI: 8.8567 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016473618.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 379.1 | 7.2e-116 | 1 | 332 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd+g++e r+k+ ++ ++ +s+k q+m+++aerda+i+ernlalsek+a++aerdma lqrd+a+aern a++erdn+ ++l+++e
XP_016473618.1 1 MDDSGHHEngRHKPpqgqWFLQHqPSMK-----QIMAIMAERDAAIQERNLALSEKRATLAERDMAILQRDSAIAERNSAIMERDNATATLQYQE 90
8999998879998742233445556777.....************************************************************** PP
GAGA_bind 89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk.ekkakkkkkksekskk 176
ns++ s +p+g+q+ ++ k++++ qq +++ pql++++++ ++++++e+ + aa+e ++++++k++++ak +kk++k+ kk +k+ +
XP_016473618.1 91 NSMNsgnmSPCPPGCQIARELKHMHHPQQhVHHqPQLGEPTFNHSDMHMNESSIQSPAAPEPTKSRRNKRSKEAKLVTsSKKTSKPSKKVKKEGE 185
**99999889******************964446*********9999998887766666666655555544444322202222233333333333 PP
GAGA_bind 177 kvkkesader......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
+ +k+ de+ +k+++k++dl+ln+vs+Dest+PvPvCsCtG+lr CYkWGnGGWqS+CCt ++S+yPLP+ ++
XP_016473618.1 186 DLNKSMLDESqewngaqemgggnddvnrqlgvTKTDWKDQDLGLNQVSFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTNNLSMYPLPTLPN 280
3333333322456799******************************************************************************* PP
GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+r+aRi+grKmS++af+klL++LaaeGydlsnpvDLkd WAkHGtn+++ti+
XP_016473618.1 281 KRHARIGGRKMSGSAFTKLLSRLAAEGYDLSNPVDLKDNWAKHGTNRYITIK 332
***************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MDDSGHHENG RHKPPQGQWF LQHQPSMKQI MAIMAERDAA IQERNLALSE KRATLAERDM 60
AILQRDSAIA ERNSAIMERD NATATLQYQE NSMNSGNMSP CPPGCQIARE LKHMHHPQQH 120
VHHQPQLGEP TFNHSDMHMN ESSIQSPAAP EPTKSRRNKR SKEAKLVTSS KKTSKPSKKV 180
KKEGEDLNKS MLDESQEWNG AQEMGGGNDD VNRQLGVTKT DWKDQDLGLN QVSFDESTMP 240
VPVCSCTGVL RPCYKWGNGG WQSSCCTNNL SMYPLPTLPN KRHARIGGRK MSGSAFTKLL 300
SRLAAEGYDL SNPVDLKDNW AKHGTNRYIT IK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982302 | 0.0 | FJ982302.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds. |
