PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016473568.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 355aa MW: 38306.4 Da PI: 9.7042

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016473568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	8e-38	71	131	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ +kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+sss XP_016473568.1 71 EAVQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSSS 131 56789****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-32	54	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-32	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MVFSSISAYL DPANWQQQAG HSIPNPQFQS VQPPRPLAAP PPVQTYVGGG GTIRPGSMAD 60 RARLANIPMA EAVQKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG 120 GGCRRNKRSS SSTKATNNNN NTPKSPGSST STGGCRQIAT NSGSTSNNNN SFSSPSSAAS 180 LLGLMSPQIH HPLRFMSPLG QLTDHHFTPN NDNNITMNYS AISSSSAPVA GTNENMSFQL 240 GMGGNLEQWR LQQQVANQFP NFYGGLDSSS ASGLYPFHPA YYTSNDAGGV TVTSSQIRPK 300 ITNPMLTQLA LMKMEDNHEH SSLSRQFVGN ENWSNGSAWN ELSASFSSSS TSNAL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MVFSSISAYL DPANWQQQAG HSIPNPQFQS VQPPRPLAAP PPVQTYVGGG GTIRPGSMAD  60
RARLANIPMA EAVQKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG  120
GGCRRNKRSS SSTKATNNNN NTPKSPGSST STGGCRQIAT NSGSTSNNNN SFSSPSSAAS  180
LLGLMSPQIH HPLRFMSPLG QLTDHHFTPN NDNNITMNYS AISSSSAPVA GTNENMSFQL  240
GMGGNLEQWR LQQQVANQFP NFYGGLDSSS ASGLYPFHPA YYTSNDAGGV TVTSSQIRPK  300
ITNPMLTQLA LMKMEDNHEH SSLSRQFVGN ENWSNGSAWN ELSASFSSSS TSNAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780702.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_016473568.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S4AA97	0.0	A0A1S4AA97_TOBAC; dof zinc finger protein DOF2.4-like
TrEMBL	A0A1U7WL54	0.0	A0A1U7WL54_NICSY; dof zinc finger protein DOF2.4-like
STRING	XP_009780702.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	8e-45	DNA binding with one finger 2.4