PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016473415.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 469aa MW: 51476.7 Da PI: 4.9677

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016473415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	116	175	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_016473415.1 116 PDKILPCPRCNSMETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 175 68999****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	113	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-32	118	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MSELKDPAIK LFGKTIQLPD IQESLQDDSS PEETNEEEEE EDVQTHKDDF GGHLDDDKDE 60 MGTLTGKELQ DQNSDQSRSD TIEGPPVDND GSTRPSKSEE EQGEASNSQE KILKRPDKIL 120 PCPRCNSMET KFCYFNNYNV SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKNSISHYR 180 QISVPETLPN AQTDYPNGIQ QPILAFGSHK PLCESMASVL NIADKTMHNC PPNGFHKPEE 240 SRVQVSYGAG DNGDDHSRRS SVSAANSEDE VNKIGPDLLR KNCPSFPPYL ACYPGAAWPY 300 PCSSVHWTSA VPPPGYCPPV FPIPFYPTAA YWGYNVAGSW NVPLASPPTA SLTQTPPTSG 360 PNSPLGKHSR DENILKPLNS KEEPSKESNH EKCLWVPKTL RIDDPGEAAK SSIWATLGIK 420 HDSVDSVGGS PFSAFQSKND GNNSVSENST VLQANPAALS RSLNFNEGL

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MSELKDPAIK LFGKTIQLPD IQESLQDDSS PEETNEEEEE EDVQTHKDDF GGHLDDDKDE  60
MGTLTGKELQ DQNSDQSRSD TIEGPPVDND GSTRPSKSEE EQGEASNSQE KILKRPDKIL  120
PCPRCNSMET KFCYFNNYNV SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKNSISHYR  180
QISVPETLPN AQTDYPNGIQ QPILAFGSHK PLCESMASVL NIADKTMHNC PPNGFHKPEE  240
SRVQVSYGAG DNGDDHSRRS SVSAANSEDE VNKIGPDLLR KNCPSFPPYL ACYPGAAWPY  300
PCSSVHWTSA VPPPGYCPPV FPIPFYPTAA YWGYNVAGSW NVPLASPPTA SLTQTPPTSG  360
PNSPLGKHSR DENILKPLNS KEEPSKESNH EKCLWVPKTL RIDDPGEAAK SSIWATLGIK  420
HDSVDSVGGS PFSAFQSKND GNNSVSENST VLQANPAALS RSLNFNEGL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774295.1	0.0	PREDICTED: cyclic dof factor 3-like
Refseq	XP_016473415.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1S4A9V0	0.0	A0A1S4A9V0_TOBAC; cyclic dof factor 3-like
TrEMBL	A0A1U7WJ70	0.0	A0A1U7WJ70_NICSY; cyclic dof factor 3-like
STRING	XP_009774295.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-94	cycling DOF factor 2