PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473393.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 172aa    MW: 19808.3 Da    PI: 9.4684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-19755254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +y+GVr+++ +g+Wv+eIr+ps    ++r++lg+f tae+Aa+a+++a++ + 
  XP_016473393.1  7 RYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTFETAEDAAQAYDEAARLMC 55
                    69******9.**********944...5**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-33666No hitNo description
SMARTSM003807.8E-40770IPR001471AP2/ERF domain
PROSITE profilePS5103220.613764IPR001471AP2/ERF domain
PfamPF008471.1E-11756IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-33764IPR001471AP2/ERF domain
PRINTSPR003675.6E-11819IPR001471AP2/ERF domain
PRINTSPR003675.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MARTQQRYRG VRQRHWGSWV SEIRHPSLKT RIWLGTFETA EDAAQAYDEA ARLMCGPIAR  60
TNFPYNASQS QSSRFLSSAL IAKLQRCHMT SLGMPKKSGR TKLETKENQI SPQIRNRGDG  120
KMRFDMPVNE GYSQIQRESA HQFKPLEDQD IEQMIEELLD YGSIELSSVL NQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-17671470ATERF1
3gcc_A9e-17671470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473393.11e-128PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-60ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4A9S61e-126A0A1S4A9S6_TOBAC; ethylene-responsive transcription factor ERF003-like
STRINGXP_009773910.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-47ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]