PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016473388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 28075.4 Da PI: 6.3009 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.4e-19 | 59 | 109 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +++Wv+e+r+ps+ +kr++lg++ t+e+Aa+a++ a+++l+g+ XP_016473388.1 59 IYRGVRRRN-NNKWVCELREPSK---QKRIWLGTYPTPEMAARAHDVAALALRGN 109 69****887.8*********964...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.70E-30 | 58 | 118 | No hit | No description |
Pfam | PF00847 | 6.3E-14 | 58 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-29 | 59 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.983 | 59 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 59 | 118 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-29 | 59 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTNINSISCS LDSNHSQETS SSSSERSSSA PDEGIILLAS SRPKKRAGRK KFKETRHPIY 60 RGVRRRNNNK WVCELREPSK QKRIWLGTYP TPEMAARAHD VAALALRGNS ATLNFADSLW 120 RLPVIVSKDP KDLRQAAVKA AEAFRQDPEL VRVDYMNEEV NSNEEVKCQE NFVNGNGNDM 180 GVKEVKMKNM EIENIFCSNW GENSEESWQE KMAEGLLFSP TPRLGNCFSW DDVEISDVEV 240 SLWNYNI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764159.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
Refseq | XP_016473388.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | Q9LN86 | 2e-54 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A1S4A9S1 | 0.0 | A0A1S4A9S1_TOBAC; dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A1U7VP82 | 0.0 | A0A1U7VP82_NICSY; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_009764159.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 5e-46 | ERF family protein |
Publications ? help Back to Top | |||
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