PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473386.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 159aa    MW: 16929.8 Da    PI: 6.5027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-172271155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  XP_016473386.1 22 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTPEMAAAAYDVAALALKG 71
                    68****9.55.6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-102271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-252380IPR001471AP2/ERF domain
PROSITE profilePS5103219.7172380IPR001471AP2/ERF domain
SMARTSM003802.2E-252386IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-172381IPR016177DNA-binding domain
CDDcd000187.53E-152480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MADLSNIVVE NKQSPRTNTK HPVYRGIRCR SGKWVSEIRE PRKTTRIWLG TFPTPEMAAA  60
AYDVAALALK GSSNVVLNFP CHVNFYPQLP PSPSPADIQS AAAIAAALMK KEAGDGIVVA  120
QQGNDDKLSG NSGGATCNEG DSVGATCNEG DSIEXYIYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1320841176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473386.11e-115PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9LYD33e-32DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S4A9Y21e-114A0A1S4A9Y2_TOBAC; ethylene-responsive transcription factor ERF027-like
STRINGXP_009764158.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]