PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473294.1
Common NameNtmybA1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1015aa    MW: 112868 Da    PI: 4.7617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-184892348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      WT+eEde+l +av+q+ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_016473294.1 48 QWTPEEDEILRQAVQQFKGKSWKRIAECFK-DRTDVQCLHRWQKVL 92
                     7****************************9.************986 PP
2Myb_DNA-binding59.95.6e-1998144148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+++v+++G++ W+tIa+++  gR +kqc++rw+++l
   XP_016473294.1  98 KGSWTKEEDDKLIELVNRYGPKKWSTIAQELA-GRIGKQCRERWHNHL 144
                      799*****************************.*************97 PP
3Myb_DNA-binding45.81.4e-14150192145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+  a+ +  gR+++ +k++w+
   XP_016473294.1 150 KEPWTQEEELTLIRAHQVYGNK-WAELAKVLH-GRSDNAIKNHWH 192
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-154199IPR009057Homeodomain-like
PROSITE profilePS5129418.5874192IPR017930Myb domain
SMARTSM007173.0E-144594IPR001005SANT/Myb domain
PfamPF002491.9E-154892IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1948101IPR009057Homeodomain-like
CDDcd001679.74E-144992No hitNo description
PROSITE profilePS5129431.43993148IPR017930Myb domain
SuperFamilySSF466891.46E-3095191IPR009057Homeodomain-like
SMARTSM007172.3E-1897146IPR001005SANT/Myb domain
CDDcd001673.14E-16100144No hitNo description
PfamPF139213.8E-19101159No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26102151IPR009057Homeodomain-like
PROSITE profilePS5129419.233149199IPR017930Myb domain
SMARTSM007173.1E-14149197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-21152199IPR009057Homeodomain-like
CDDcd001671.05E-10152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MLDYPDLPLS LTMESDKTST TPSDDISSLQ RVQPSHGRTS GPKRRSSQWT PEEDEILRQA  60
VQQFKGKSWK RIAECFKDRT DVQCLHRWQK VLDPELVKGS WTKEEDDKLI ELVNRYGPKK  120
WSTIAQELAG RIGKQCRERW HNHLNPAINK EPWTQEEELT LIRAHQVYGN KWAELAKVLH  180
GRSDNAIKNH WHSSVKKKLD SYLASGLLAQ FPALPNVNHQ NQSVPSSSMT LQQNSEDESV  240
HKEGTEAEDS SVKKKLDSYS ASGLLGQFSA LPNVNHQNQS VPSSSMTLQQ NSEDESVHKE  300
GMEAEEVPEC SQGSNFAGCS QSTSDLGNTF VHIRENGGMS EESICKKDAT SSTAPCCRNY  360
SPVFQDVSCS MLKVPSELAD SKFLEHNLSH DWGNSMEEDW QFNRDDIPNI SPPEFIQESS  420
GISVHCLTGN DNHDMVATAN VGNVVEDPYK PNEMFVSVDG SMMVYPEEGI PQCSPSETGV  480
NGCGQPSYSL FYQSSNYQIP EAGDMVPQNC NALNFDDFEA SFHQPFSVPS QFSSEDRSSV  540
FDIVLNQFHN PPLEGPDHMK DSSRIVPVND IGSTTSNTVQ TCLLNENSFV QEEQKDGGAL  600
CYDPPRFPSS DVPFFCCDLI QSGSDTQEEY SPFGIRQLMM TSANCLTPLR LWDSPSRDDS  660
PDAILKSAAK TFTGTPSILK KRHRHLLSPL SEKRCEKKLE SNLNQESFYN MSTNFSRPDD  720
MFDESANEKA SMEDKENLHP SSEDGRKEEG EISGANDATG MVKQHPGVLV ELSSNDLFFS  780
PDRFLIKCDR ATSLSNKALG RQYARRLEAA SNQVTVSSSF ETSCLSVVCS PDICGKHRGS  840
VVIATSTALE NTAEDSENGF GAETLSIFGE TPFKRSFESP SAWKSPWFMS SFPPSTRYDT  900
ELEFEDLALF MSPGDRSYDA IGLMKQLSEQ TAPSIADAHQ ILGSETPETN LSKRNSKKPK  960
ADENCTLLAS NATSERRTLD FNECGIPGKG KETTKFGSNN NSFSSPSSYL LKYCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-64471997159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-64471997159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561220.0AB056122.1 Nicotiana tabacum NtmybA1 mRNA for Myb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473293.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_016473294.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_016473295.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A1S4A9H40.0A0A1S4A9H4_TOBAC; myb-related protein 3R-1-like
STRINGXP_009627768.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-101Homeodomain-like protein