PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016473208.1

Common Name

NtBBF3

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 286aa MW: 31656.2 Da PI: 7.0377

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016473208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.9	3e-40	52	112	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCdst+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s XP_016473208.1 52 HDQPLKCPRCDSTHTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKKVS 112 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	46	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	53	110	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.217	56	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	58	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGITSLQVCM DSSNWLQDTV HEETELDSSS SPSGDIFTCS RPLIERKLRP QHDQPLKCPR 60 CDSTHTKFCY YNNYSLTQPR YFCKSCRRYW TKGGTLRNIP VGGGCRKNKK VSSKKLSNEN 120 ATNYQNPGSS SSSISNFPEM AFSHFTNFMG NNNPSNFMLE NPAPIDFMES KYETLVGSSR 180 NQDFLVNVDQ LGMINGYGDI NGIAPNFHAG LCSTFGLPME GNIMNYDGQN AIDVKPNPKV 240 LSLEWHDQGC SNSGNKESFG YFNGGLGSWT GLMNNGYGSS GTNPLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB971710	0.0	AB971710.1 Nicotiana tabacum NtBBF3 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312528.1	0.0	dof zinc finger protein DOF5.6-like
Refseq	XP_009774394.1	0.0	PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBL	A0A0B6VJP1	0.0	A0A0B6VJP1_TOBAC; Dof zinc finger protein
TrEMBL	A0A1U7WIB0	0.0	A0A1U7WIB0_NICSY; dof zinc finger protein DOF5.6-like
STRING	XP_009774394.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4895	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-46	Dof family protein