PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016473165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 415aa MW: 46026.5 Da PI: 8.9189 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69 | 5.9e-22 | 114 | 157 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r+v++g+k+C H+hrg rsrk +e+ XP_016473165.1 114 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHMHRG-RRSRKLVEA 157 79*********************************.688888876 PP | |||||||
2 | WRC | 61.6 | 1.3e-19 | 302 | 337 | 2 | 37 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 +ep rCrR+DGKkWRCsr++++ +k+CE H+hrg + XP_016473165.1 302 TEPQRCRRSDGKKWRCSRNAVPRQKYCETHMHRGAK 337 79*******************************976 PP | |||||||
3 | QLQ | 39.6 | 1.6e-14 | 50 | 86 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT Q+++L Q+ ++Ky+++++PvP +L + i++ XP_016473165.1 50 SVFTTVQFHELQLQAVIFKYIVSGLPVPFHLFFTIWN 86 67*****************************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.9E-6 | 50 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 16.281 | 51 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.3E-10 | 52 | 85 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.778 | 114 | 160 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.8E-18 | 115 | 152 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 20.453 | 301 | 345 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.2E-17 | 303 | 338 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MQPHLSSATP LSHSGKDERE KNEGSPPCIK LSLGYVVEEE EKGVNAIAKS VFTTVQFHEL 60 QLQAVIFKYI VSGLPVPFHL FFTIWNTVSS SLGSAVINKL YPTLGRFDYA SMMDPEPGRC 120 RRTDGKKWRC KRDVIPGQKY CGQHMHRGRR SRKLVEASEH VMKSDDICIT PKRTKLYANS 180 DDPGSKCAPA SSKTSCLSST SRNNQNNSVE DSSAKPRPTN SCNSSEKLDN HMTFNRKDTT 240 TCIRTQSFIA GNDTDSKSID FNHISPSKTN QKQSYGDARN SGGLAPVFGI SAKIDLQHTT 300 ETEPQRCRRS DGKKWRCSRN AVPRQKYCET HMHRGAKKIM AASDSVIVEP SKPSSYRFCH 360 QVIPKNDGTG INLNTSLSIS TLPDPQNITE DDDSNSNSTS DATTITDEIP AFVSH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800682.1 | 0.0 | PREDICTED: growth-regulating factor 9 isoform X2 | ||||
Refseq | XP_016473165.1 | 0.0 | PREDICTED: growth-regulating factor 9-like isoform X2 | ||||
TrEMBL | A0A1S4A948 | 0.0 | A0A1S4A948_TOBAC; growth-regulating factor 9-like isoform X2 | ||||
TrEMBL | A0A1U7Y988 | 0.0 | A0A1U7Y988_NICSY; growth-regulating factor 9 isoform X2 | ||||
STRING | XP_009800681.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 3e-34 | growth-regulating factor 9 |