PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473081.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 357aa    MW: 40808.4 Da    PI: 4.8673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151465148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++       + R++k+c++rw +yl
   XP_016473081.1 14 KGLWSPEEDEKLYNYITKFGVGCWSSVPKLAEilagLQRCGKSCRLRWINYL 65
                     678***********************************************97 PP

2Myb_DNA-binding51.13e-1671116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+++++++++ lG++ W+ Ia+ ++ gRt++++k++w++yl
   XP_016473081.1  71 RGMFSQEEEDIILNLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNSYL 116
                      788*******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-23968IPR009057Homeodomain-like
PROSITE profilePS5129416.257965IPR017930Myb domain
SuperFamilySSF466894.03E-2912112IPR009057Homeodomain-like
SMARTSM007174.1E-111367IPR001005SANT/Myb domain
PfamPF002491.6E-131465IPR001005SANT/Myb domain
CDDcd001674.43E-101765No hitNo description
PROSITE profilePS5129425.6566120IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2669121IPR009057Homeodomain-like
SMARTSM007175.2E-1570118IPR001005SANT/Myb domain
PfamPF002494.9E-1571116IPR001005SANT/Myb domain
CDDcd001673.21E-1174116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRHSVFVKE KLRKGLWSPE EDEKLYNYIT KFGVGCWSSV PKLAEILAGL QRCGKSCRLR  60
WINYLRPNLK RGMFSQEEED IILNLHEVLG NRWAQIAAQL PGRTDNEIKN FWNSYLKKKL  120
IKQGIDPNTH QPLSENQVRN ETDCTDKASM LLIPQLPSMS ISANMEQPFH LSETSVDCEA  180
NRQLTEASRN QLVSKQVFDP LFLFEFQANV DPSEYNSELL GQSQQNLRPY DHQNQIEGNP  240
NFGFCSMPSL TNFEHGHMTE TEFSDSSSSR MSLLYTSEAK ESSSNSSTMN NNHNAAEIQM  300
NDMLGNPQDL SWDSENKIDS LFQYPYSGIK NEEDFSNNPL SSLSEDTCGE NLVFHHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121205108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473081.10.0PREDICTED: myb-related protein 330-like isoform X1
TrEMBLA0A1S4A9240.0A0A1S4A924_TOBAC; myb-related protein 330-like isoform X1
STRINGXP_009773279.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-72myb domain protein 86