PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016473081.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 40808.4 Da PI: 4.8673 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ + R++k+c++rw +yl XP_016473081.1 14 KGLWSPEEDEKLYNYITKFGVGCWSSVPKLAEilagLQRCGKSCRLRWINYL 65 678***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+++++++++ lG++ W+ Ia+ ++ gRt++++k++w++yl XP_016473081.1 71 RGMFSQEEEDIILNLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNSYL 116 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-23 | 9 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.257 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-29 | 12 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-11 | 13 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-13 | 14 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-10 | 17 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.65 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 69 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 71 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.21E-11 | 74 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRHSVFVKE KLRKGLWSPE EDEKLYNYIT KFGVGCWSSV PKLAEILAGL QRCGKSCRLR 60 WINYLRPNLK RGMFSQEEED IILNLHEVLG NRWAQIAAQL PGRTDNEIKN FWNSYLKKKL 120 IKQGIDPNTH QPLSENQVRN ETDCTDKASM LLIPQLPSMS ISANMEQPFH LSETSVDCEA 180 NRQLTEASRN QLVSKQVFDP LFLFEFQANV DPSEYNSELL GQSQQNLRPY DHQNQIEGNP 240 NFGFCSMPSL TNFEHGHMTE TEFSDSSSSR MSLLYTSEAK ESSSNSSTMN NNHNAAEIQM 300 NDMLGNPQDL SWDSENKIDS LFQYPYSGIK NEEDFSNNPL SSLSEDTCGE NLVFHHI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 120 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473081.1 | 0.0 | PREDICTED: myb-related protein 330-like isoform X1 | ||||
TrEMBL | A0A1S4A924 | 0.0 | A0A1S4A924_TOBAC; myb-related protein 330-like isoform X1 | ||||
STRING | XP_009773279.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-72 | myb domain protein 86 |