PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472888.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 282aa    MW: 31201.3 Da    PI: 8.1367
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.71.4e-061474755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f+++++ e+e+  +      p +e    LA+k            ++ +qV +WFqNrR+  
  XP_016472888.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74
                    666777777777774335567777888888888888888888899*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-9475IPR009057Homeodomain-like
SMARTSM003890.006781IPR001356Homeobox domain
PROSITE profilePS500718.9241377IPR001356Homeobox domain
CDDcd000860.001491375No hitNo description
Gene3DG3DSA:1.10.10.607.1E-71379IPR009057Homeodomain-like
PfamPF167198.1E-39161277IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDSAMVRT PAKLSASPVP QSDPAAVRIM  120
PQASQPISSP QVKSMPQAPQ PLPAPSVAAQ NVGRSASDNI QMEFEAKSAR DGAWYDVASF  180
LSHRSVETAD PEVLVRFAGF GAEEDEWVNV CKHVRQRSLP CESSECVAVL PGDLILCFQE  240
GKEQALYFDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEV FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A6e-411622794121SHH1 SAWADEE
4iur_B6e-411622794121SHH1 SAWADEE
4iut_A6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B6e-411622794121SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547101e-48AC254710.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-57k18 map 10, complete sequence.
GenBankHG9755221e-48HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758415.10.0PREDICTED: proteoglycan 4-like
RefseqXP_016472888.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-122SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S4A8C10.0A0A1S4A8C1_TOBAC; protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
TrEMBLA0A1U7V9C70.0A0A1U7V9C7_NICSY; proteoglycan 4-like
STRINGXP_009758415.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-113sequence-specific DNA binding transcription factors;sequence-specific DNA binding