PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016472696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 584aa MW: 66340.7 Da PI: 9.519 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 5e-12 | 65 | 146 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ ++p +fa+++ ++ ++ + le +sg++Wev++ ++gr+ l+ GW++F + + gDf++F ++ rs f +v++f+ XP_016472696.1 65 DLLCTQRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSQGRICLGIGWQDFSDFYSISCGDFLMFGYNARSHF--NVTIFD 146 4456679*********5454444..***************..999999**************************999999..999987 PP | |||||||
2 | B3 | 44.9 | 2.1e-14 | 378 | 456 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ps+v+k +l ++ fa+++ ++e++ l+l+ +s sW+vk+ + +++ ++ +Wk Fv +n+Lk gD++vF+l++ XP_016472696.1 378 MQPSYVSKPYNLHISFLFARKYF-PEECG-NLVLRVPSRGSWTVKYVVGRSK--AEIRFCWKAFVLDNKLKFGDVCVFELIKG 456 67999****99***********7.33454.9***************555555..558999*******************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-17 | 21 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0012 | 56 | 148 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-16 | 65 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.04E-10 | 67 | 146 | No hit | No description |
Pfam | PF02362 | 1.4E-8 | 68 | 146 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.223 | 72 | 148 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-19 | 366 | 457 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-19 | 367 | 457 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.7E-9 | 373 | 464 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 374 | 469 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.86E-16 | 378 | 457 | No hit | No description |
Pfam | PF02362 | 3.7E-12 | 378 | 456 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MAAKPQLQRD EGSSHWKSST NITQPKFFKI IFSQHESSRL VYCRIFSRKT GIFYCDSRSM 60 KLSLDLLCTQ RIPEDFASRY CKNMLNPVYL EVPSGEVWEV EVVHSQGRIC LGIGWQDFSD 120 FYSISCGDFL MFGYNARSHF NVTIFDLSAS EIEYPYSSVH GIHTPISYCH ETRHAPKRDQ 180 SGSDDSVEIL EGIPRSQKAK AKIPDTVEHS VENLGQCPLG QSSKRKRQKG DAEHDASVDM 240 HVKRMKVEKL QEDVASPSFI REGQNHGEGT EIEHSLEILD HCPSGHGSKR KGLEGDAEDD 300 VSTDIHTRSI KVEKSRENVA SPSFTRKTKK SGESCRMHKQ QSKLVSAKNK TVLEKKRSIA 360 YQRARAFKSE NPFVIYFMQP SYVSKPYNLH ISFLFARKYF PEECGNLVLR VPSRGSWTVK 420 YVVGRSKAEI RFCWKAFVLD NKLKFGDVCV FELIKGTKPI LDATIFPAAE SKAKHKIDGK 480 LPDVSDCKNK IIKTENSEDA GKHVQQSKSS CKGRVVAKEM VIAYQRAKAF KSENPFFVCF 540 MQPSYVSSAC GPMRLDWKVL KTKKATNNFW YGGGSMGRLF QHFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-13 | 346 | 470 | 21 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-13 | 346 | 470 | 21 | 144 | B3 domain-containing transcription factor VRN1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 245 | RKRQKGDAEHDASVDMHVKRMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016472696.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X5 | ||||
TrEMBL | A0A1S4A7Y7 | 0.0 | A0A1S4A7Y7_TOBAC; B3 domain-containing protein Os11g0197600-like isoform X5 | ||||
STRING | XP_009622351.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-15 | B3 family protein |