PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472309.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 306aa    MW: 33814.2 Da    PI: 5.9234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.9e-12115162355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+r  + f+ L + +P +     kKl+Ka+iLe  ++YI +Lq
  XP_016472309.1 115 QDHLLAERKRRERFTQLFAVLAKSIPGL-----KKLDKASILEDSIKYIGELQ 162
                     668899**********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.481112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9115162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-14116171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-11117166No hitNo description
SuperFamilySSF474596.28E-14117172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-12118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MENASFNNLE NTAGDEEPFE FKNLLSEMFT SFPNQNPSST SSLMEIPKIA FSSSPNSSTS  60
TNSSSSSSLN IISFGNPDSN FLGDEIDYDM ISEKVVIGLS SSPTKRICRS PLQSQDHLLA  120
ERKRRERFTQ LFAVLAKSIP GLKKLDKASI LEDSIKYIGE LQGRVRALEE AGTTKSKNLI  180
ESTSTVQKQF PLAATASDVN SFLAKNFDES KPDQNDIKVQ ILDKNILIGI HCSKEIRSIF  240
TIIAGIMEKL HLTIHHIRVT PSNHIALHYI SVLAEIDQNV DIRVQDVENA FKLALPSTSN  300
RPGLAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755185e-54HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472309.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4A6S70.0A0A1S4A6S7_TOBAC; transcription factor bHLH18-like
STRINGXP_009623662.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125981122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-24bHLH family protein