PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016472235.1 | ||||||||
Common Name | ERF168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 24177.8 Da PI: 7.13 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 94 | 144 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVrw++ +g+++AeIrdp +g +r +lg++ t+e+Aa a+++a+ k++g XP_016472235.1 94 RYIGVRWRP-WGKFAAEIRDPDRRG--ARLWLGTYETPEDAALAYDQAAFKIRG 144 699******.**********95454..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.5E-14 | 94 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-27 | 94 | 154 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-30 | 94 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 94 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-33 | 94 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 94 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 134 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MNPADNATFS FSDLDFLDSI DHHLLINSDF SNSFSPMSSS NVATPNSRSS SFGSCLLDEN 60 IEETTTLESQ SETEEQTQGG KAARERNTKQ DWRRYIGVRW RPWGKFAAEI RDPDRRGARL 120 WLGTYETPED AALAYDQAAF KIRGSRARLN FPHLIGSNMP EPARVKGSCH NSCSLEPSSS 180 SSTPLSENGT RKRNIDVINS IAKAKSVGHI RNLHMLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-27 | 93 | 152 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB828151 | 0.0 | AB828151.1 Nicotiana tabacum ERF168 mRNA for ethylene response factor 168, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312505.1 | 1e-161 | ethylene-responsive transcription factor 2-like | ||||
TrEMBL | S0BBR2 | 1e-160 | S0BBR2_TOBAC; Ethylene response factor 168 | ||||
STRING | XP_009609535.1 | 1e-159 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-36 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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