PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472143.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 76865 Da    PI: 8.2122
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24113214199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  XP_016472143.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 203
                     89****************************997556555..8************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+++r+
  XP_016472143.1 204 NGELCVGIRRA 214
                     999******97 PP
2Auxin_resp107.91.1e-35274356283
      Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a  a ++++FevvY+Prast+eF+v++++v++a++++++ GmRfkmafete ss++++ +Gt+++++ +dp++WpnS+Wr+L+
  XP_016472143.1 274 AYLAPSGQPFEVVYYPRASTPEFCVRASSVNTAVRIHWCSGMRFKMAFETEVSSRISWfMGTISSIQVADPIHWPNSPWRLLQ 356
                     6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-38107220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29108216IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-23112213No hitNo description
PROSITE profilePS5086313.535113215IPR003340B3 DNA binding domain
PfamPF023621.3E-22113214IPR003340B3 DNA binding domain
SMARTSM010191.1E-23113215IPR003340B3 DNA binding domain
PfamPF065078.5E-31274356IPR010525Auxin response factor
PROSITE profilePS5174513.959585665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MKEVMEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLVNVDFST LPRTPALILC  60
RVAAVKFLAD PETDEVYARI RLVPVGNKGN DFDDDNILGG SNETGTNDKP TSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSNFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPETPSGWNS ASGNYSGFSA  240
FFREDMNKNG SLNSSGGSFK GKGRVRPESV IEAAYLAPSG QPFEVVYYPR ASTPEFCVRA  300
SSVNTAVRIH WCSGMRFKMA FETEVSSRIS WFMGTISSIQ VADPIHWPNS PWRLLQVTWD  360
EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFLLDGQFP LPSFSGNPLR  420
SSSPFCCLSD NITAGIQRAR HAQFGVPLLD LHLSNKVQSG LLPPSFQRVA ANSKLTNCIN  480
KGQNDRNDNI SCLLTMSTSS QMSEKTDSVN TPRFLLFGQP ILTEQQISNR CSANAQEVQT  540
GRDLGRIEMR NERFAFEQKG LQDSVSSATY LWNRGHHAAG LGADTGQCKV FLESEDVGLS  600
LDLSVLGSYE ELYRRLGNLF GLERSDMLTC VLYHNATGAV KHTGEEPFSD FVKTAKRLTI  660
LMNPSSNIER KWITGLATAE RGLDSSNRAG PLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-81937751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9117880.0JF911788.1 Solanum lycopersicum cultivar MP1 auxin response factor 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472143.10.0PREDICTED: auxin response factor 18-like
RefseqXP_016472144.10.0PREDICTED: auxin response factor 18-like
RefseqXP_016472145.10.0PREDICTED: auxin response factor 18-like
RefseqXP_016472146.10.0PREDICTED: auxin response factor 18-like
RefseqXP_016472147.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S4A6F40.0A0A1S4A6F4_TOBAC; Auxin response factor
STRINGXP_009797612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]