PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472071.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 240aa    MW: 25577.8 Da    PI: 4.629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.4e-16102149355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  XP_016472071.1 102 FRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 149
                     89995..678*********843...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-27101165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-25101157IPR001471AP2/ERF domain
PROSITE profilePS5103219.902101157IPR001471AP2/ERF domain
CDDcd000186.25E-16102157No hitNo description
SuperFamilySSF541712.94E-17102158IPR016177DNA-binding domain
PfamPF008472.6E-9102149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MADHPADDST KTSQKNQPPQ PSESSQTPFC PIPPPLLPPL PVEETNISPR PLISDIAILE  60
NTKSPPKTVQ LPNIIPTVTT TMSSTSSGGS PSRPTGGKHA VFRGIRSRSG KWVSEIREPR  120
KTTRIWLGTY PTPEMAAAAY DVAALALKGG DAVINFPGNL TSYPSLPPSP SPADIRKADA  180
TAAMISTDGG NEYIDEEALF DMPNLLVDMA EAMMVSPPRM NSPPPSDSPG NSDTESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1492157572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472071.11e-172PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S4A6771e-171A0A1S4A677_TOBAC; ethylene-responsive transcription factor ERF027-like
STRINGXP_009764333.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]