PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471935.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27616.7 Da    PI: 10.1029
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.32.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fss+g++yeys+
  XP_016471935.1  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSSRGRVYEYSN 59
                    79***********************************************95 PP
2K-box84.22.7e-28791828100
           K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK.........nellleqieelqkkekelqeen 91 
                     +  ++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL+++eL+qLe++Le+++++iRskK         +e++l+++e+lqk+e +l++en
  XP_016471935.1  79 ActTQELNAQFYQQESKKLRQQIQMIQNSNRHLVGEGLSSLNVRELKQLENRLERGITRIRSKKgtlkllrilHEMILAETENLQKREIQLEQEN 173
                     24478899********************************************************777777777799******************* PP

           K-box  92 kaLrkklee 100
                       Lr+k++e
  XP_016471935.1 174 AFLRSKVAE 182
                     ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.347161IPR002100Transcription factor, MADS-box
CDDcd002652.58E-41274No hitNo description
SuperFamilySSF554552.62E-32276IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2483180IPR002487Transcription factor, K-box
PROSITE profilePS5129714.84887186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFSS RGRVYEYSNN  60
NIKATIDRYK KATSETSNAC TTQELNAQFY QQESKKLRQQ IQMIQNSNRH LVGEGLSSLN  120
VRELKQLENR LERGITRIRS KKGTLKLLRI LHEMILAETE NLQKREIQLE QENAFLRSKV  180
AENERLQELS MMPAGGQEYS AIQQYLARNM LQLNMMEGGV PNSYHHQLPT DKKSLELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q3e-20169169Myocyte-specific enhancer factor 2B
1tqe_R3e-20169169Myocyte-specific enhancer factor 2B
1tqe_S3e-20169169Myocyte-specific enhancer factor 2B
6c9l_A3e-20169169Myocyte-specific enhancer factor 2B
6c9l_B3e-20169169Myocyte-specific enhancer factor 2B
6c9l_C3e-20169169Myocyte-specific enhancer factor 2B
6c9l_D3e-20169169Myocyte-specific enhancer factor 2B
6c9l_E3e-20169169Myocyte-specific enhancer factor 2B
6c9l_F3e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX816511e-144X81651.1 P.hybrida mRNA for MADS box containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016471935.11e-173PREDICTED: agamous-like MADS-box protein AGL11
SwissprotF6I4571e-110AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A1S4A5P61e-171A0A1S4A5P6_TOBAC; agamous-like MADS-box protein AGL11
STRINGXP_009599024.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.13e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]