PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016471877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 512aa MW: 58065.9 Da PI: 5.4818 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 338.9 | 9.1e-104 | 133 | 511 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + Lle +a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + + f+evsP+ +f+h++ XP_016471877.1 133 DILLETSRAIADKNSTRVQQLMWMLNELSSPYGDTEQKLASYFLQALFSRMTDSGERCYRTLVSASDKTCSFESTRKLVLKFQEVSPWTTFGHVA 227 6799**********************************************************8888876555555455555************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rl 186 N aI+ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+ ++ ++ ++e+g+r++kfA+ +gvpf+f+v+++ +l XP_016471877.1 228 SNGAIMEAFEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVGGATggtaaMQKVMKEIGSRMEKFARLMGVPFKFSVIHHMgNL 322 ************************************************9998666678999999************************96656** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpr 277 ++l++ +L++k++Eala+n++ +lh++ + ++rd +++l+k+l+P++v++ve+ead++ + +F+++f e+l++ + f+sl++++p+ XP_016471877.1 323 SELDVGALDIKEDEALAINCIGALHSVS----PAGNRRDYLISLFKRLQPRIVTIVEEEADLDVGvdgfDFVKGFQECLRWIRVYFESLDESFPK 413 ***************************8....777889*********************99865556669************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvs 369 +s+er ++Er+ gr+iv+++ac +e+ er+et +kW +rl++ GF+p+ +s+++ +++++llr++k +g+++ +s+ ++l Wk++p+v+ XP_016471877.1 414 TSNERLMLERQ-AGRSIVDLLACPPSESMERRETGAKWLHRLHAGGFSPILYSDEVCDDVRALLRRYK-EGWSMTqcgGDSAGIFLSWKEQPVVW 506 ***********.********************************************************.7766663446799999********** PP GRAS 370 vSaWr 374 +SaW+ XP_016471877.1 507 ASAWK 511 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.074 | 105 | 489 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-101 | 133 | 511 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MDTLFRLVTL QQQQQQSDQS FNSSRTSSSS RSSNKQNTYS TYNYPPHHNQ EDEECFNFFM 60 DEDDFSSNSS SKHNNYPPPY HYQQQQQQFS NTPTPTTTSS TPTQSHQYYD QFSPARDLNL 120 EFGSSFSGKW ATDILLETSR AIADKNSTRV QQLMWMLNEL SSPYGDTEQK LASYFLQALF 180 SRMTDSGERC YRTLVSASDK TCSFESTRKL VLKFQEVSPW TTFGHVASNG AIMEAFEGES 240 KLHIIDISNT YCTQWPTLLE ALATRTDETP HLRLTTVVVG GATGGTAAMQ KVMKEIGSRM 300 EKFARLMGVP FKFSVIHHMG NLSELDVGAL DIKEDEALAI NCIGALHSVS PAGNRRDYLI 360 SLFKRLQPRI VTIVEEEADL DVGVDGFDFV KGFQECLRWI RVYFESLDES FPKTSNERLM 420 LERQAGRSIV DLLACPPSES MERRETGAKW LHRLHAGGFS PILYSDEVCD DVRALLRRYK 480 EGWSMTQCGG DSAGIFLSWK EQPVVWASAW KP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 0.0 | 122 | 512 | 78 | 474 | Protein SHORT-ROOT |
5b3h_B | 0.0 | 122 | 512 | 24 | 420 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 122 | 512 | 24 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016471877.1 | 0.0 | PREDICTED: protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A1S4A5E5 | 0.0 | A0A1S4A5E5_TOBAC; protein SHORT-ROOT-like | ||||
STRING | XP_009804718.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 0.0 | GRAS family protein |