PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471594.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 288aa MW: 31831.6 Da PI: 9.478

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	64.3	2e-20	26	73	3	50
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 k+is++++sk F+lp+ dAA +Lgvc++vLK+iC ++G+ RWP+Rk+ XP_016471594.1 26 KSISFDQVSKLFNLPLSDAAESLGVCASVLKKICYENGLVRWPYRKVI 73 79********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.426	10	94	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-18	28	72	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSNLQGSGPI SNPIQNPTPN PSTDPKSISF DQVSKLFNLP LSDAAESLGV CASVLKKICY 60 ENGLVRWPYR KVISGKCIED IKEEASREKQ ERSVEFPKAA GEKRDSLASS AISSFPGSPL 120 QNKSISSTME MPKAGAFSQQ QGTRNAQSGS LPHFRISNLT KATSVSYDEF KYGFPSDGLS 180 TVTYRWWGNK SPDNNEDSQP NNDNAKNNKE QAENVAEKSE CKTSVDSMEV SSLTDVRKRA 240 VKEGKEMLRL GVYRGHRANM LDSTKRKILR QVFKSYFHVN GGMSNLES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471594.1	0.0	PREDICTED: uncharacterized protein LOC107793702
TrEMBL	A0A1S4A4S3	0.0	A0A1S4A4S3_TOBAC; uncharacterized protein LOC107793702
STRING	XP_009600090.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10744	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-11	RWP-RK domain-containing protein