PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471123.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 273aa MW: 31074.4 Da PI: 9.2739

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.5	1.2e-27	132	186	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016471123.1 132 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNSYELSISNIKSHLQKYRV 186 689***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.14E-15	129	186	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-24	130	187	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-21	132	186	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	136	185	IPR001005	SANT/Myb domain
Pfam	PF14379	6.1E-16	219	265	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MPMCSHELEM YDTASTSNNP LDKCDLADEN FKSRDTLHSL VQSSVSFRHK PESSTKNLLQ 60 QNKSALKGAI TSRHPYPSMA RGRQVKKDSF DSRIIKPCYV CQLEKRPQSP PNESVCISSS 120 NVTPERAETT KKRRITWTQD LHEQFCECVN RLGGAKKATP KAILKLMNSY ELSISNIKSH 180 LQKYRVTCDV TVSLKDAVKT EGSPRRSSFP AHGPETCPQI LEALKLQISV QQSLYEQLEI 240 QRSLQLRIEE QAKQLKEMFD RQAETNKNFQ LSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	132	185	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471123.1	0.0	PREDICTED: putative two-component response regulator-like APRR6 isoform X2
Swissprot	Q0WVU3	1e-37	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1S4A3A9	0.0	A0A1S4A3A9_TOBAC; putative two-component response regulator-like APRR6 isoform X2
STRING	XP_009790926.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	5e-40	G2-like family protein