PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471056.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 321aa MW: 36357.3 Da PI: 8.6591

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.2	1.6e-27	180	234	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016471056.1 180 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNSYELSISNIKSHLQKYRV 234 689***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-14	177	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-24	178	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-21	180	234	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	184	233	IPR001005	SANT/Myb domain
Pfam	PF14379	7.8E-16	267	313	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MLIKGVSGCD DSLYGILCKH LESRTSKFSA SESSRTFGQF CENSDDHIMP MCSHELEMYD 60 TASTSNNPLD KCDLADENFK SRDTLHSLVQ SSVSFRHKPE SSTKNLLQQN KSALKGAITS 120 RHPYPSMARG RQVKKDSFDS RIIKPCYVCQ LEKRPQSPPN ESVCISSSNV TPERAETTKK 180 RRITWTQDLH EQFCECVNRL GGAKKATPKA ILKLMNSYEL SISNIKSHLQ KYRVTCDVTV 240 SLKDAVKTEG SPRRSSFPAH GPETCPQILE ALKLQISVQQ SLYEQLEIQR SLQLRIEEQA 300 KQLKEMFDRQ AETNKNFQLS V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-15	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471056.1	0.0	PREDICTED: uncharacterized protein LOC107793225 isoform X1
Swissprot	Q0WVU3	6e-37	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1S4A3B2	0.0	A0A1S4A3B2_TOBAC; uncharacterized protein LOC107793225 isoform X1
STRING	XP_009790926.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA23735	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	3e-39	G2-like family protein